View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8807_low_3 (Length: 297)
Name: NF8807_low_3
Description: NF8807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8807_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 46 - 288
Target Start/End: Complemental strand, 16793320 - 16793078
Alignment:
| Q |
46 |
tctctaattttactacagacatggaatccaaagtcaaaatctgagctatatgcacattcagcagcagaggtagtgaaattggcaaagacaactgtggaag |
145 |
Q |
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| T |
16793320 |
tctctaattttactacagacatggaatccaaagtcaaaatctgagctatatgcacattcagcagcagaggtagtgaaattggcaaagacaactgtggaag |
16793221 |
T |
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| Q |
146 |
agttctttcaaattccaataggaataactgaagaactagttcaagatcttgctaatggattggaaagtctcttacaggactatatgatgtttgttgcagc |
245 |
Q |
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| T |
16793220 |
agttctttcaaattccaataggaataactgaagaactagttcaagatcttgctaatggattggaaagtctcttacaggactatatgatgtttgttgcagc |
16793121 |
T |
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| Q |
246 |
atgtggtaagtactgtaaatacatgaaattaattaaagaataa |
288 |
Q |
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| T |
16793120 |
atgtggtaagtactgtaaatacataaaattaattaaagaataa |
16793078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 61 - 255
Target Start/End: Original strand, 32734643 - 32734837
Alignment:
| Q |
61 |
cagacatggaatccaaagtcaaaatctgagctatatgcacattcagcagcagaggtagtgaaattggcaaagacaactgtggaagagttctttcaaattc |
160 |
Q |
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| T |
32734643 |
cagacatggaatccaaagtctaaaacagaactatatgcacaatcagcttctgagctaatgaaattggtagagacgatcgtggacgaattcttccaagttc |
32734742 |
T |
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| Q |
161 |
caataggaataactgaagaactagttcaagatcttgctaatggattggaaagtctcttacaggactatatgatgtttgttgcagcatgtggtaag |
255 |
Q |
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| T |
32734743 |
caatagcaattacagaagatttagttcaagaccttgttgatggattggaaatcctcttcctagactacatgaaatttgttgcatcatgtggtaag |
32734837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 207
Target Start/End: Complemental strand, 14877036 - 14876890
Alignment:
| Q |
61 |
cagacatggaatccaaagtcaaaatctgagctatatgcacattcagcagcagaggtagtgaaattggcaaagacaactgtggaagagttctttcaaattc |
160 |
Q |
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|||||||||||||||||||| ||||| |||| ||||| | |||| | ||| | |||| ||||| |||| || |||| |||||||||||||||||| |
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| T |
14877036 |
cagacatggaatccaaagtctaaatcggagccgtatgcgaaatcagtggtggagctgatgaatttggcgaagaaaattgtgcaagagttctttcaaattc |
14876937 |
T |
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| Q |
161 |
caataggaataactgaagaactagttcaagatcttgctaatggattg |
207 |
Q |
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| T |
14876936 |
cggttgcaataactgaggatttagttcaagaacttgttgatggattg |
14876890 |
T |
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