View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8808_high_2 (Length: 415)
Name: NF8808_high_2
Description: NF8808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8808_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 22 - 404
Target Start/End: Complemental strand, 26786117 - 26785735
Alignment:
| Q |
22 |
aggttttctgataaacaaattgtgaggcttcaggagacacctgacgagatacctgaaggaggaacacctcacactgttagcttgctattgcatgacaaac |
121 |
Q |
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| T |
26786117 |
aggttttctgataaacaaattgtgaggcttcaggagacacctgatgagatacctgaaggaggaacacctcacactgttagcttgctattgcatgacaaac |
26786018 |
T |
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| Q |
122 |
tggtggatactggaaagccaggtgacagagttgaggtgagactataccatgagatactctgataaatagatattcttatgtttgttcaatcgtcccatga |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26786017 |
tggtggatactggaaagccaggtgacagagttgaggtgagactataccatgagatactctgataaatagatattcttatgtttgttcaatcgtcccatga |
26785918 |
T |
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| Q |
222 |
gtgnnnnnnngtacatcaggtgactggtatatacagggctatgagtgtcagggtgggaccaactcagagaactgttaagtcattgttcaaagtatgggtt |
321 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26785917 |
gtgttttgttgtacatcaggtgactggtatatacagggctatgagtgtcagggtgggaccaactcagagaactgttaagtcattgttcaaagtatgggtt |
26785818 |
T |
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| Q |
322 |
accttctcaaactcttttgcatttagagcttctccttttcatttttcatcttgtctaattgacatttgttttgttttgttcat |
404 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26785817 |
accttctcaaactcatttgcatttagagcttctccttttcatttttcatcttgtctaattgacatttgttttcttttgttcat |
26785735 |
T |
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