View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8808_high_3 (Length: 391)

Name: NF8808_high_3
Description: NF8808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8808_high_3
NF8808_high_3
[»] chr5 (1 HSPs)
chr5 (18-382)||(29838035-29838399)
[»] chr3 (13 HSPs)
chr3 (69-380)||(210208-210519)
chr3 (100-373)||(196964-197237)
chr3 (206-380)||(224827-225001)
chr3 (199-380)||(216941-217122)
chr3 (199-380)||(221886-222067)
chr3 (204-373)||(204956-205125)
chr3 (36-163)||(216808-216935)
chr3 (36-163)||(221753-221880)
chr3 (253-351)||(198274-198372)
chr3 (247-351)||(226110-226214)
chr3 (247-351)||(211667-211771)
chr3 (253-351)||(203584-203682)
chr3 (18-60)||(205229-205271)
[»] chr4 (3 HSPs)
chr4 (204-373)||(6903368-6903537)
chr4 (253-351)||(6904803-6904901)
chr4 (18-60)||(6903168-6903210)
[»] chr1 (1 HSPs)
chr1 (231-374)||(3808343-3808487)


Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 382
Target Start/End: Original strand, 29838035 - 29838399
Alignment:
Q  18 atcaatttaagtggaaacataaataactcaacatttactttaaagtaaaaatctcaccgcatattttcccttaacgattttggaacgaaaataagggttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29838035 atcaatttaagtggaaacataaataactcaacatttactttaaagtaaaaatctcaccgcatattttcccttaacgattttggaacgaaaataagggttg 29838134  T
Q  118 tttgggttgagttctttggcagcatcctcaactcttttagaagcatatttagacatgtttttgacctttttccgaagcctctcacatgtttcaaccttgg 217  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29838135 tttgggttgagttctttggcggcatcctctactcttttagaagcatatttagacatgtttttgacctttttccgaagcctctcacatgtttcaaccttgg 29838234  T
Q  218 acctttttctagaactaggataatttgtttttggttctccattagtacttggagtttcgaaaggataggaaatttcaacagaagttgcatcaaatataat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29838235 acctttttctagaactaggataatttgtttttggttctccattagtacttggagtttcgaaaggataggaaatttcaacagaagttgcatcaaatataat 29838334  T
Q  318 aacactaaactttgaattcccttcatatttgaaagaaatgaagcaaccatatcctatagaataat 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29838335 aacactaaactttgaattcccttcatatttgaaagaaatgaagcaaccatatcctatagaataat 29838399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 69 - 380
Target Start/End: Original strand, 210208 - 210519
Alignment:
Q  69 tctcaccgcatattttcccttaacgattttggaacgaaaataagggttgtttgggttgagttctttggcagcatcctcaactcttttagaagcatattta 168  Q
    ||||||||||| | |||||||   |||||| |||||||||| |||||| || ||||||| | | ||||||||||||||  | |||||| ||||||| |||    
T  210208 tctcaccgcatgtcttcccttggtgatttttgaacgaaaatgagggtttttcgggttgaatgcattggcagcatcctctgcccttttataagcataatta 210307  T
Q  169 gacatgtttttgacctttttccgaagcctctcacatgtttcaaccttggacctttttctagaactaggataatttgtttttggttctccattagtacttg 268  Q
    |||||| |||||||||||||||   | ||||||| |||||||||||||||||||||  |||  |||||| | |  || |||| ||||||| |||||||||    
T  210308 gacatgcttttgacctttttccctggactctcacttgtttcaaccttggaccttttcataggcctaggacactcggtgtttgtttctccactagtacttg 210407  T
Q  269 gagtttcgaaaggataggaaatttcaacagaagttgcatcaaatataataacactaaactttgaattcccttcatatttgaaagaaatgaagcaaccata 368  Q
    ||||||  || |||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||| ||||||| | ||||||||| ||    
T  210408 gagtttttaatggatagcaaatttcaacagaagttgcatcaaatataataacgctaaaatttgaattcccttcgtatctgaaagacaggaagcaaccgta 210507  T
Q  369 tcctatagaata 380  Q
    || || ||||||    
T  210508 tcttaaagaata 210519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 100 - 373
Target Start/End: Original strand, 196964 - 197237
Alignment:
Q  100 gaacgaaaataagggttgtttgggttgagttctttggcagcatcctcaactcttttagaagcatatttagacatgtttttgacctttttccgaagcctct 199  Q
    |||| |||||||||||| ||||| |||| ||| ||||||||| ||||  ||||| ||||||||| |||||||| | ||||| ||||||||| | | | ||    
T  196964 gaacaaaaataagggttttttggtttgaattcattggcagcaacctctgctcttgtagaagcatgtttagacacgcttttggcctttttcccatgacact 197063  T
Q  200 cacatgtttcaaccttggacctttttctagaactaggataatttgtttttggttctccattagtacttggagtttcgaaaggataggaaatttcaacaga 299  Q
    ||| |||||||||||||||||||||  ||| ||||| | | ||||| |||||||||||||||  |||||||||||  || |||||  |||| |||||| |    
T  197064 cacttgtttcaaccttggaccttttcgtaggactagcacattttgtgtttggttctccattaacacttggagtttttaatggataacaaatctcaacata 197163  T
Q  300 agttgcatcaaatataataacactaaactttgaattcccttcatatttgaaagaaatgaagcaaccatatccta 373  Q
    |||| | ||||||||||||||||||||||||||||||||||| ||||||||||| | | |||||||||| ||||    
T  197164 agttacgtcaaatataataacactaaactttgaattcccttcgtatttgaaagataggtagcaaccatacccta 197237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 206 - 380
Target Start/End: Original strand, 224827 - 225001
Alignment:
Q  206 tttcaaccttggacctttttctagaactaggataatttgtttttggttctccattagtacttggagtttcgaaaggataggaaatttcaacagaagttgc 305  Q
    |||||||| ||||||||||  |||  |||||| | | ||| |||| ||||||||||||||||||||||| ||  |||||| |||| |||||||||||| |    
T  224827 tttcaaccctggaccttttcgtaggtctaggacactctgtgtttgtttctccattagtacttggagttttgagtggatagcaaatctcaacagaagttac 224926  T
Q  306 atcaaatataataacactaaactttgaattcccttcatatttgaaagaaatgaagcaaccatatcctatagaata 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||    
T  224927 atcaaatataataacactaaactttgaattcccttcatatttgaaagacatgaagcaaccatatcttaaagaata 225001  T

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Target: chr3; HSP #4
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 199 - 380
Target Start/End: Original strand, 216941 - 217122
Alignment:
Q  199 tcacatgtttcaaccttggacctttttctagaactaggataatttgtttttggttctccattagtacttggagtttcgaaaggataggaaatttcaacag 298  Q
    |||| ||||||||||||||||||||| |||| |||| || | |||||||||| ||||||||| |||||| |||||| ||| |||||| |||| |||| ||    
T  216941 tcacttgtttcaaccttggaccttttcctaggactatgaaactttgtttttgtttctccatttgtactttgagttttgaatggatagcaaatctcaatag 217040  T
Q  299 aagttgcatcaaatataataacactaaactttgaattcccttcatatttgaaagaaatgaagcaaccatatcctatagaata 380  Q
    ||||||||||||||||||  |||||||||||||||| |||||||||||||||| | | |||| ||||||| |||||||||||    
T  217041 aagttgcatcaaatataaagacactaaactttgaatccccttcatatttgaaacacaggaaggaaccataccctatagaata 217122  T

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Target: chr3; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 199 - 380
Target Start/End: Original strand, 221886 - 222067
Alignment:
Q  199 tcacatgtttcaaccttggacctttttctagaactaggataatttgtttttggttctccattagtacttggagtttcgaaaggataggaaatttcaacag 298  Q
    |||| ||||||||||||||||||||| |||| |||| || | ||||| |||| |||||||||| ||||| |||||| ||| |||||| |||| |||||||    
T  221886 tcacttgtttcaaccttggaccttttcctaggactatgacactttgtgtttgtttctccattaatactttgagttttgaatggatagcaaatctcaacag 221985  T
Q  299 aagttgcatcaaatataataacactaaactttgaattcccttcatatttgaaagaaatgaagcaaccatatcctatagaata 380  Q
    ||||| |||||||||||| |||| |||||||||||| ||||||||||||||||   | |||| ||||||| |||||||||||    
T  221986 aagttacatcaaatataacaacattaaactttgaatccccttcatatttgaaacgcaagaaggaaccataccctatagaata 222067  T

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Target: chr3; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 204 - 373
Target Start/End: Complemental strand, 205125 - 204956
Alignment:
Q  204 tgtttcaaccttggacctttttctagaactaggataatttgtttttggttctccattagtacttggagtttcgaaaggataggaaatttcaacagaagtt 303  Q
    |||||||||| | || |||||||||| | ||||| | | ||| |||| ||||||||||||||| ||||||| ||  |||||| |||| ||||| ||||||    
T  205125 tgtttcaacccttgaactttttctaggagtaggacattgtgtatttgtttctccattagtactcggagttttgagtggatagcaaatctcaaccgaagtt 205026  T
Q  304 gcatcaaatataataacactaaactttgaattcccttcatatttgaaagaaatgaagcaaccatatccta 373  Q
     |||||||||||| |||||||||||||||||| ||||| ||||||||||| | | |||||||| ||||||    
T  205025 acatcaaatataacaacactaaactttgaatttccttcgtatttgaaagataggtagcaaccacatccta 204956  T

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Target: chr3; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 36 - 163
Target Start/End: Original strand, 216808 - 216935
Alignment:
Q  36 ataaataactcaacatttactttaaagtaaaaatctcaccgcatattttcccttaacgattttggaacgaaaataagggttgtttgggttgagttctttg 135  Q
    |||||||||||||||||| |||||||||||||  |||||| |||| ||||||||||  |||||||||| |||||||||||| ||||| || | |||||||    
T  216808 ataaataactcaacatttgctttaaagtaaaatcctcaccacataatttcccttaagaattttggaacaaaaataagggttttttggattaaattctttg 216907  T
Q  136 gcagcatcctcaactcttttagaagcat 163  Q
    ||||| |||||  |||||||||||||||    
T  216908 gcagcttcctctgctcttttagaagcat 216935  T

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Target: chr3; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 36 - 163
Target Start/End: Original strand, 221753 - 221880
Alignment:
Q  36 ataaataactcaacatttactttaaagtaaaaatctcaccgcatattttcccttaacgattttggaacgaaaataagggttgtttgggttgagttctttg 135  Q
    |||||||||||||||||| ||||||||||||| ||||||| ||||||||| |||||  |||||||||| ||| |||||||| ||||| |||| ||| |||    
T  221753 ataaataactcaacatttgctttaaagtaaaattctcaccacatattttctcttaagaattttggaacaaaagtaagggttttttggattgaattccttg 221852  T
Q  136 gcagcatcctcaactcttttagaagcat 163  Q
    ||||| |||||   ||||||||||||||    
T  221853 gcagcttcctctgatcttttagaagcat 221880  T

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Target: chr3; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 253 - 351
Target Start/End: Original strand, 198274 - 198372
Alignment:
Q  253 tctccattagtacttggagtttcgaaaggataggaaatttcaacagaagttgcatcaaatataataacactaaactttgaattcccttcatatttgaaa 351  Q
    |||||||||||||||||||||| ||| | ||| ||||| ||||||||||||| |||| |||||| |||| |||||||||||||||||| ||| ||||||    
T  198274 tctccattagtacttggagttttgaatgaataagaaatctcaacagaagttgtatcatatataacaacattaaactttgaattcccttgatagttgaaa 198372  T

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Target: chr3; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 247 - 351
Target Start/End: Original strand, 226110 - 226214
Alignment:
Q  247 tttggttctccattagtacttggagtttcgaaaggataggaaatttcaacagaagttgcatcaaatataataacactaaactttgaattcccttcatatt 346  Q
    ||||||||||||||||| ||  |||||| ||| ||||| ||||| ||||||||||||  |||  |||||| |||| | ||||||||||||||||||||||    
T  226110 tttggttctccattagtcctccgagtttggaatggataagaaatctcaacagaagttctatcgtatataacaacattgaactttgaattcccttcatatt 226209  T
Q  347 tgaaa 351  Q
    |||||    
T  226210 tgaaa 226214  T

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Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 247 - 351
Target Start/End: Original strand, 211667 - 211771
Alignment:
Q  247 tttggttctccattagtacttggagtttcgaaaggataggaaatttcaacagaagttgcatcaaatataataacactaaactttgaattcccttcatatt 346  Q
    |||| |||||||||||| ||  |||||| ||| ||||| ||||| ||||||||||||| |||  |||||| |||| | ||||||||||||||||| ||||    
T  211667 tttgcttctccattagtcctccgagtttggaatggataagaaatctcaacagaagttgtatcgtatataacaacattgaactttgaattcccttcgtatt 211766  T
Q  347 tgaaa 351  Q
    |||||    
T  211767 tgaaa 211771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 253 - 351
Target Start/End: Complemental strand, 203682 - 203584
Alignment:
Q  253 tctccattagtacttggagtttcgaaaggataggaaatttcaacagaagttgcatcaaatataataac-actaaactttgaattcccttcatatttgaaa 351  Q
    |||||||||||||||| ||||| ||| ||||| ||||| |||||| |||||| |||| |||||| ||| || ||| |||||||| |||||||| ||||||    
T  203682 tctccattagtacttgaagttttgaatggataagaaatctcaacaaaagttggatcatatataacaactacgaaa-tttgaatttccttcatacttgaaa 203584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 205271 - 205229
Alignment:
Q  18 atcaatttaagtggaaacataaataactcaacatttactttaa 60  Q
    |||||||||||||  ||||||||||||||||||||||||||||    
T  205271 atcaatttaagtgacaacataaataactcaacatttactttaa 205229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 204 - 373
Target Start/End: Original strand, 6903368 - 6903537
Alignment:
Q  204 tgtttcaaccttggacctttttctagaactaggataatttgtttttggttctccattagtacttggagtttcgaaaggataggaaatttcaacagaagtt 303  Q
    |||||||||| |||| |||||||||| | ||||| | | ||| |||| ||||||||||||||| ||||||| ||  |||||| |||| ||||| ||||||    
T  6903368 tgtttcaaccctggaactttttctaggagtaggacattgtgtatttgtttctccattagtactcggagttttgagtggatagcaaatctcaaccgaagtt 6903467  T
Q  304 gcatcaaatataataacactaaactttgaattcccttcatatttgaaagaaatgaagcaaccatatccta 373  Q
     ||||||||||||||||||||||||||||||| ||||| ||||||||||| | | |||||||||||||||    
T  6903468 acatcaaatataataacactaaactttgaatttccttcgtatttgaaagataggtagcaaccatatccta 6903537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 351
Target Start/End: Original strand, 6904803 - 6904901
Alignment:
Q  253 tctccattagtacttggagtttcgaaaggataggaaatttcaacagaagttgcatcaaatataataac-actaaactttgaattcccttcatatttgaaa 351  Q
    |||||||||||||||||||||| ||| ||||| ||||| |||||| |||||| |||| |||||| ||| || ||| ||||||||| ||||||| ||||||    
T  6904803 tctccattagtacttggagttttgaatggataagaaatctcaacaaaagttggatcatatataacaactacgaaa-tttgaattctcttcatacttgaaa 6904901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 6903168 - 6903210
Alignment:
Q  18 atcaatttaagtggaaacataaataactcaacatttactttaa 60  Q
    |||||||||||||  ||||||||||||||||||||||||||||    
T  6903168 atcaatttaagtgacaacataaataactcaacatttactttaa 6903210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 231 - 374
Target Start/End: Original strand, 3808343 - 3808487
Alignment:
Q  231 actaggataatttgtttttggttctccattagtacttggagtttcgaaaggataggaaatttcaacagaagttgcatcaaatataataacactaaacttt 330  Q
    ||||||||| ||||| |||||||||| ||||||||||||||||| ||| |||||| ||||  ||||||||||| | ||||||||||||||||||||||||    
T  3808343 actaggatactttgtgtttggttctctattagtacttggagttttgaacggatagcaaatcccaacagaagttacgtcaaatataataacactaaacttt 3808442  T
Q  331 -gaattcccttcatatttgaaagaaatgaagcaaccatatcctat 374  Q
     ||||| |||||||| |||||||||| | | ||||||||||||||    
T  3808443 ggaatttccttcataattgaaagaaaggtaccaaccatatcctat 3808487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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