View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8808_high_4 (Length: 346)
Name: NF8808_high_4
Description: NF8808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8808_high_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 24269896 - 24270221
Alignment:
| Q |
1 |
ctggtgcacaacgttcttctcacgaaactccgacaacgggatcaaagcttcacccacaaaaaacccacatcaacataatcataattctataatccttatc |
100 |
Q |
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| T |
24269896 |
ctggtgcaccacgttcttctcacgaaactccgacaacgggatcaaagctt-----------aacccacatcaacataatcataatcctataattcttatc |
24269984 |
T |
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| Q |
101 |
aacaaaaattaannnnnnnnnnnnnnnnnatgaaagtttaattaaaagatgttacttacgagaaccagtggttgcccaaagaagattacgagattcagtg |
200 |
Q |
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| T |
24269985 |
aacaaaaattaatttttttt---------atgaaagtttaattaaaagctgttacttacgagaaccagtggttgcccaaagaagattacgagattcagtg |
24270075 |
T |
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| Q |
201 |
ggatgggaatgattgacatgaacgatatagagtgtatcaccggtacgaagaagattatcgatagcccatttgagagcgatcttgcttcctttggagaaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24270076 |
ggatgggaatgattgacatgaacgatatagagtgtatcaccggtacgaagaagattgtcgatagcccatttgagagcgatcttgcttcctttggagaaat |
24270175 |
T |
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| Q |
301 |
ctaaagctacaccaatttgcctaccactcgccatgtttttcttttt |
346 |
Q |
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| T |
24270176 |
ctaaagctacaccaatttgccttccactcgccatgtttttcttttt |
24270221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 8945273 - 8945368
Alignment:
| Q |
13 |
gttcttctcacgaaactccgacaacgggatcaaagcttcacccacaaaaaacccacatcaacataatcataattctataatccttatcaacaaaaa |
108 |
Q |
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| T |
8945273 |
gttcttctcacgaaactccgacaacgagatcagagcttcacccataaaaaaccctcatcaacataatcataattctaatatccttattaacaaaaa |
8945368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 51856087 - 51856182
Alignment:
| Q |
13 |
gttcttctcacgaaactccgacaacgggatcaaagcttcacccacaaaaaacccacatcaacataatcataattctataatccttatcaacaaaaa |
108 |
Q |
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||||||||||| |||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||| |||||||| |||||||| |
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| T |
51856087 |
gttcttctcacaaaactccgacaacgggatcagagcttcacccataaaaaaccctcatcaacataatcataattctaatatccttattaacaaaaa |
51856182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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