View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8809_low_1 (Length: 353)
Name: NF8809_low_1
Description: NF8809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8809_low_1 |
 | |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
| [»] scaffold0267 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 31)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 2 - 340
Target Start/End: Original strand, 10500445 - 10500783
Alignment:
| Q |
2 |
gatgataaagatagactcgtcaatatgttggtatcagatattggaacaggcagaaataataatttaggtgttgttgcaattttgggtatgggaggcgtcg |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10500445 |
gatgataaagatagactcgtcaatatgttggtatcagatattggaacaggcagaaataataatttaggtgttgttgcaattttgggtatgggaggcgtcg |
10500544 |
T |
|
| Q |
102 |
gtaaaacaacacttgctcaacttgtttacaacgatgataaaattgaagaacattttgatctgaaggcatggatttgtgtaccggaggatttcgatgttgt |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10500545 |
gtaaaacaacacttgctcaacttgtttacaacgacgataaaattgaagaacattttgatctgaaggcatggatttgtgtaccggaggatttcgatgttgt |
10500644 |
T |
|
| Q |
202 |
gagaataaccaaatctctccttgaatctgttgttagaaatacaacatctgtcaattcaatggtggaaagcaataatcttgatatccttcaagttgactta |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
10500645 |
gagaataaccaaatctctccttgaatctgttgttagaaatacaacatctgtcaattcaatggtcgaaagcaataatcttgatatccttcaagttgagtta |
10500744 |
T |
|
| Q |
302 |
atgaaacatttgatggatagaagatttttgtttgtgttg |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10500745 |
atgaaacatttgatggatagaagatttttgtttgtgttg |
10500783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 2 - 295
Target Start/End: Original strand, 10527227 - 10527522
Alignment:
| Q |
2 |
gatgataaagatagactcgtcaatatgttggtatcagatattggaacaggcagaaataataatttaggtgttgttgcaattttgggtatgggaggcgtcg |
101 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||| ||| || | ||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
10527227 |
gatgataaagat-gactcatcaatatgttggtatcagactgtggcaccagtagaaataataatttaggtgttgttgcaatcttgggtatgggaggtgtcg |
10527325 |
T |
|
| Q |
102 |
gtaaaacaacacttgctcaacttgtttacaacgatgataaaattgaagaacattttgatctgaaggcatggatttgtgtaccggaggatttcgatgttgt |
201 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| ||||| || ||||| | ||||||||||| ||||| ||| ||| |||| | ||||||||||||||||| |
|
|
| T |
10527326 |
gtaaaacaacccttgcacaacttgtttacaatgatgaaaaggttgaacaccattttgatctcaaggcctgggtttatgtatcagaggatttcgatgttgt |
10527425 |
T |
|
| Q |
202 |
gagaataaccaaatctctccttgaatctgttgttagaaatacaacatctgtcaattcaatggt---ggaaagcaataatcttgatatccttcaagtt |
295 |
Q |
| |
|
|||| ||||||| |||||| ||||||||||||||||||||||| ||||| ||||| ||| |||||||||||||||||||||||||| |||| |
|
|
| T |
10527426 |
gagagtaaccaagtctctcattgaatctgttgttagaaatacatcatcttctgcttcaaaggtctgggaaagcaataatcttgatatccttcgagtt |
10527522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 2 - 297
Target Start/End: Original strand, 10517353 - 10517651
Alignment:
| Q |
2 |
gatgataaagatagactcgtcaatatgttggtatcagatattggaacaggcagaaataataatttaggtgttgttgcaattttgggtatgggaggcgtcg |
101 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||| ||| |||||||||||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
10517353 |
gatgataaagatagactcatcaatatgttggtatcagatgttggcacaagcagaaataataatttaggtgttgctgcaattgtgggtatgggaggcgtcg |
10517452 |
T |
|
| Q |
102 |
gtaaaacaacacttgctcaacttgtttacaacgatgataaaattgaagaacattttgatctgaaggcatggatttgtgtaccggaggatttcgatgttgt |
201 |
Q |
| |
|
||||||| || ||||| || |||||||||| |||| ||| ||||| ||||||||||| | || || ||| |||||||| | |||||||| |||||| | |
|
|
| T |
10517453 |
gtaaaacgacccttgcacagtttgtttacaatgatgcaaaagttgaacaacattttgatttcaaagcctgggtttgtgtatctgaggattttgatgttat |
10517552 |
T |
|
| Q |
202 |
gagaataaccaaatctctccttgaatctgttgttagaaatacaacatctgtcaattcaatggt---ggaaagcaataatcttgatatccttcaagttga |
297 |
Q |
| |
|
||| |||||| ||| ||||||||||| ||||||||||||||||||| | |||| ||| ||||||| |||||||||||||||||| |||||| |
|
|
| T |
10517553 |
tagagcaaccaagtctatccttgaatctattgttagaaatacaacatcagctggctcaaaggtttgggaaagcgataatcttgatatccttcgagttga |
10517651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 2 - 297
Target Start/End: Complemental strand, 11782183 - 11781885
Alignment:
| Q |
2 |
gatgataaagatagactcgtcaatatgttggtatcagatattggaacaggcagaaataataatttaggtgttgttgcaattttgggtatgggaggcgtcg |
101 |
Q |
| |
|
|||||||||||||||||| |||||||| || ||||||| | || ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11782183 |
gatgataaagatagactcatcaatatgctgatatcagaccgcagcaccagcagaaataataatttaggtgttgtcgcaattttgggtatgggaggcgtcg |
11782084 |
T |
|
| Q |
102 |
gtaaaacaacacttgctcaacttgtttacaacgatgataaaattgaagaacattttgatctgaaggcatggatttgtgtaccggaggatttcgatgttgt |
201 |
Q |
| |
|
||||||| || ||||| || ||||||||||| |||| ||| ||||| ||||||||||| | || | ||| |||||||| ||||||||||||||||||| |
|
|
| T |
11782083 |
gtaaaacgacccttgcacagcttgtttacaatgatgtgaaagttgaacaacattttgatttcaaagtctgggtttgtgtatcggaggatttcgatgttgt |
11781984 |
T |
|
| Q |
202 |
gagaataaccaaatctctccttgaatctgttgttagaaatacaacatctgtcaattcaatggt---ggaaagcaataatcttgatatccttcaagttga |
297 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| || ||||||||| ||||| ||| ||||||| |||||||||||||||||| |||||| |
|
|
| T |
11781983 |
tagaataaccaagtctctccttgaatctgttgttaaaagtacaacatcatctgcttcaaaggtttgggaaagcgataatcttgatatccttcgagttga |
11781885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 57 - 228
Target Start/End: Complemental strand, 10375970 - 10375799
Alignment:
| Q |
57 |
ataataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaacgatgataaaattgaagaacattt |
156 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||| | || ||||| || ||||| |||||||||||||| ||||| ||| || || ||||||| |
|
|
| T |
10375970 |
ataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcacaacttgtttacaatgatgaaaaagttcaacaacattt |
10375871 |
T |
|
| Q |
157 |
tgatctgaaggcatggatttgtgtaccggaggatttcgatgttgtgagaataaccaaatctctccttgaatc |
228 |
Q |
| |
|
|||| ||||||||||| |||||| | |||||||| ||| || ||||| ||||||| |||||||||||||| |
|
|
| T |
10375870 |
tgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaaccaagtctctccttgaatc |
10375799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 68 - 231
Target Start/End: Complemental strand, 11131140 - 11130977
Alignment:
| Q |
68 |
ggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaacgatgataaaattgaagaacattttgatctgaagg |
167 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||| |||||||| ||||| ||| ||| |||||| ||||| ||| || ||||||| |||||||| || | |
|
|
| T |
11131140 |
ggtgttgttgcaattttaggtatgggaggtgtcggaaaaacaacccttgcacaaattgcttacaatgatgaaaaagttcaagaacactttgatctcaaag |
11131041 |
T |
|
| Q |
168 |
catggatttgtgtaccggaggatttcgatgttgtgagaataaccaaatctctccttgaatctgt |
231 |
Q |
| |
|
||||| ||||||| |||||||||| ||| || | ||| |||| ||| |||||||||||||||| |
|
|
| T |
11131040 |
catgggcttgtgtatcggaggattttgatattttaagagtaactaaaactctccttgaatctgt |
11130977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 68 - 231
Target Start/End: Complemental strand, 11148968 - 11148805
Alignment:
| Q |
68 |
ggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaacgatgataaaattgaagaacattttgatctgaagg |
167 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||| |||||||| ||||| ||| ||| |||||| ||||| ||| || ||||||| |||||||| || | |
|
|
| T |
11148968 |
ggtgttgttgcaattttaggtatgggaggtgtcggaaaaacaacccttgcacaaattgcttacaatgatgaaaaagttcaagaacactttgatctcaaag |
11148869 |
T |
|
| Q |
168 |
catggatttgtgtaccggaggatttcgatgttgtgagaataaccaaatctctccttgaatctgt |
231 |
Q |
| |
|
||||| ||||||| |||||||||| ||| || | ||| |||| ||| |||||||||||||||| |
|
|
| T |
11148868 |
catgggcttgtgtatcggaggattttgatattttaagagtaactaaaactctccttgaatctgt |
11148805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 57 - 231
Target Start/End: Original strand, 10126872 - 10127046
Alignment:
| Q |
57 |
ataataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaacgatgataaaattgaagaacattt |
156 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||| | || ||||| || ||||| |||||||||||||| ||| | || || || ||||||| |
|
|
| T |
10126872 |
ataataatataggtgttgttgcaattttgggcatgggaggtttgggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattt |
10126971 |
T |
|
| Q |
157 |
tgatctgaaggcatggatttgtgtaccggaggatttcgatgttgtgagaataaccaaatctctccttgaatctgt |
231 |
Q |
| |
|
|||| ||||||||||| ||||||| | |||||||| ||| || ||||| |||| || ||||||||||||||||| |
|
|
| T |
10126972 |
tgatttgaaggcatgggtttgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgt |
10127046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 57 - 231
Target Start/End: Original strand, 10663470 - 10663644
Alignment:
| Q |
57 |
ataataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaacgatgataaaattgaagaacattt |
156 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||| | || ||||| || ||||| |||||||||||||| ||| | || || || ||||||| |
|
|
| T |
10663470 |
ataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattt |
10663569 |
T |
|
| Q |
157 |
tgatctgaaggcatggatttgtgtaccggaggatttcgatgttgtgagaataaccaaatctctccttgaatctgt |
231 |
Q |
| |
|
|||| ||||||||||| ||||||| | |||||||| ||| || ||||| |||| || ||||||||||||||||| |
|
|
| T |
10663570 |
tgatttgaaggcatgggtttgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgt |
10663644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 68 - 192
Target Start/End: Original strand, 8861241 - 8861365
Alignment:
| Q |
68 |
ggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaacgatgataaaattgaagaacattttgatctgaagg |
167 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||||||||||||| ||||| ||| || |||| || |||||||| || | |
|
|
| T |
8861241 |
ggtgttgttgcaattttaggtatgggaggtgtcggtaaaacgacacttgcacaacttgtttacaatgatgaaaaagttcaagagcactttgatctcaaag |
8861340 |
T |
|
| Q |
168 |
catggatttgtgtaccggaggattt |
192 |
Q |
| |
|
||||| ||||||| | |||||||| |
|
|
| T |
8861341 |
catgggcttgtgtatcagaggattt |
8861365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 68 - 192
Target Start/End: Original strand, 10889261 - 10889385
Alignment:
| Q |
68 |
ggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaacgatgataaaattgaagaacattttgatctgaagg |
167 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||||||||||||| ||||| ||| || |||| || |||||||| || | |
|
|
| T |
10889261 |
ggtgttgttgcaattttaggtatgggaggtgtcggtaaaacgacacttgcacaacttgtttacaatgatgaaaaagttcaagagcactttgatctcaaag |
10889360 |
T |
|
| Q |
168 |
catggatttgtgtaccggaggattt |
192 |
Q |
| |
|
||||| ||||||| | |||||||| |
|
|
| T |
10889361 |
catgggcttgtgtatctgaggattt |
10889385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 59 - 230
Target Start/End: Complemental strand, 10363921 - 10363750
Alignment:
| Q |
59 |
aataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaacgatgataaaattgaagaacattttg |
158 |
Q |
| |
|
|||||| ||||||||||||||||||| || |||||||| | || ||||| || ||||| |||||||||||||| ||| | || || || ||||||||| |
|
|
| T |
10363921 |
aataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttg |
10363822 |
T |
|
| Q |
159 |
atctgaaggcatggatttgtgtaccggaggatttcgatgttgtgagaataaccaaatctctccttgaatctg |
230 |
Q |
| |
|
|| ||||||||||| ||||||| | |||||||| ||| || ||||| |||| || |||||||||||||||| |
|
|
| T |
10363821 |
atttgaaggcatgggtttgtgtctctgaggattttgatattatgagagtaacaaagtctctccttgaatctg |
10363750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 57 - 231
Target Start/End: Original strand, 10031947 - 10032121
Alignment:
| Q |
57 |
ataataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaacgatgataaaattgaagaacattt |
156 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||| | || ||||| || ||||| |||||||||||||| ||| | || || || ||||||| |
|
|
| T |
10031947 |
ataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattt |
10032046 |
T |
|
| Q |
157 |
tgatctgaaggcatggatttgtgtaccggaggatttcgatgttgtgagaataaccaaatctctccttgaatctgt |
231 |
Q |
| |
|
|||| ||||||| ||| |||||| | |||||||| ||| || ||||| |||| || ||||||||||||||||| |
|
|
| T |
10032047 |
tgatttgaaggcctgggcttgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgt |
10032121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 57 - 231
Target Start/End: Original strand, 10580545 - 10580719
Alignment:
| Q |
57 |
ataataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaacgatgataaaattgaagaacattt |
156 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||| | || ||||| || ||||| |||||||||||||| ||| | || || || ||||||| |
|
|
| T |
10580545 |
ataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattt |
10580644 |
T |
|
| Q |
157 |
tgatctgaaggcatggatttgtgtaccggaggatttcgatgttgtgagaataaccaaatctctccttgaatctgt |
231 |
Q |
| |
|
||| ||||||| ||| ||||||| | |||||||| ||| || ||||| |||| || ||||||||||||||||| |
|
|
| T |
10580645 |
tgacatgaaggcgtgggtttgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgt |
10580719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 66 - 231
Target Start/End: Original strand, 10184195 - 10184360
Alignment:
| Q |
66 |
taggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaacgatgataaaattgaagaacattttgatctgaa |
165 |
Q |
| |
|
|||||||||||||||||||||| |||||||| | || ||||| || |||||||||||||||||||| ||| | || || || ||||||||||| ||| |
|
|
| T |
10184195 |
taggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgctcaacttgtttacaatgataaagaagttcaacaacattttgatatgag |
10184294 |
T |
|
| Q |
166 |
ggcatggatttgtgtaccggaggatttcgatgttgtgagaataaccaaatctctccttgaatctgt |
231 |
Q |
| |
|
||| ||| |||||| | |||||||| ||| || ||||| ||||||| ||||||||||||||||| |
|
|
| T |
10184295 |
ggcgtgggcttgtgtgtccgaggattttgatattatgagagtaaccaagtctctccttgaatctgt |
10184360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 59 - 228
Target Start/End: Original strand, 10260644 - 10260813
Alignment:
| Q |
59 |
aataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaacgatgataaaattgaagaacattttg |
158 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||| | || ||||| || |||||||||||||||||||| ||| | || || || ||||||||| |
|
|
| T |
10260644 |
aataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgctcaacttgtttacaatgataaagaagttcaacaacattttg |
10260743 |
T |
|
| Q |
159 |
atctgaaggcatggatttgtgtaccggaggatttcgatgttgtgagaataaccaaatctctccttgaatc |
228 |
Q |
| |
|
| ||||||| ||| |||||| | |||||||| ||| || ||||| ||||||| |||||||||||||| |
|
|
| T |
10260744 |
acatgaaggcgtgggcttgtgtgtctgaggattttgatattatgagagtaaccaagtctctccttgaatc |
10260813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 59 - 231
Target Start/End: Original strand, 10088736 - 10088908
Alignment:
| Q |
59 |
aataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaacgatgataaaattgaagaacattttg |
158 |
Q |
| |
|
|||||| ||||||||||||||||||| || |||||||| | || ||||| || ||||| |||||||||||||| ||| | || || || | ||||||| |
|
|
| T |
10088736 |
aataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaccattttg |
10088835 |
T |
|
| Q |
159 |
atctgaaggcatggatttgtgtaccggaggatttcgatgttgtgagaataaccaaatctctccttgaatctgt |
231 |
Q |
| |
|
|| ||||||||||| ||||||| | |||||||| ||| || ||||| |||| || ||||||||||||||||| |
|
|
| T |
10088836 |
atttgaaggcatgggtttgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgt |
10088908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 59 - 231
Target Start/End: Original strand, 10195619 - 10195791
Alignment:
| Q |
59 |
aataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaacgatgataaaattgaagaacattttg |
158 |
Q |
| |
|
|||||| ||||||||||||||||||| || |||||||| | || ||||| || ||||| |||||||||||||| ||| | || || || | ||||||| |
|
|
| T |
10195619 |
aataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaccattttg |
10195718 |
T |
|
| Q |
159 |
atctgaaggcatggatttgtgtaccggaggatttcgatgttgtgagaataaccaaatctctccttgaatctgt |
231 |
Q |
| |
|
|| ||||||||||| ||||||| | |||||||| ||| || ||||| |||| || ||||||||||||||||| |
|
|
| T |
10195719 |
atttgaaggcatgggtttgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgt |
10195791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 56 - 192
Target Start/End: Complemental strand, 11160143 - 11160007
Alignment:
| Q |
56 |
aataataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaacgatgataaaattgaagaacatt |
155 |
Q |
| |
|
||||| ||| |||| |||||||||||||| ||||||||||| ||||||||||| |||||||| |||||||||||||| |||| ||| || |||| |||| |
|
|
| T |
11160143 |
aataacaatataggcgttgttgcaattttaggtatgggaggtgtcggtaaaacgacacttgcacaacttgtttacaataatgaaaaagttcaagatcatt |
11160044 |
T |
|
| Q |
156 |
ttgatctgaaggcatggatttgtgtaccggaggattt |
192 |
Q |
| |
|
||||| | || |||||| ||||||| | |||||||| |
|
|
| T |
11160043 |
ttgatttcaaagcatgggcttgtgtatctgaggattt |
11160007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 57 - 228
Target Start/End: Original strand, 9838805 - 9838976
Alignment:
| Q |
57 |
ataataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaacgatgataaaattgaagaacattt |
156 |
Q |
| |
|
|||| ||| |||||||||||||||||||||| |||||||| | || ||||| || ||||| |||||||||||||| ||||| || || || ||||||| |
|
|
| T |
9838805 |
ataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgatgaagaagttcaacaacattt |
9838904 |
T |
|
| Q |
157 |
tgatctgaaggcatggatttgtgtaccggaggatttcgatgttgtgagaataaccaaatctctccttgaatc |
228 |
Q |
| |
|
|||| ||| ||| ||| |||||| | |||||||| ||| || ||||| ||||||| |||||||||||||| |
|
|
| T |
9838905 |
tgatatgagggcgtgggcttgtgtgtctgaggattttgatattttgagagtaaccaagtctctccttgaatc |
9838976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 57 - 228
Target Start/End: Original strand, 9849683 - 9849854
Alignment:
| Q |
57 |
ataataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaacgatgataaaattgaagaacattt |
156 |
Q |
| |
|
|||| ||| |||||||||||||||||||||| |||||||| | || ||||| || ||||| |||||||||||||| ||||| || || || ||||||| |
|
|
| T |
9849683 |
ataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgatgaagaagttcaacaacattt |
9849782 |
T |
|
| Q |
157 |
tgatctgaaggcatggatttgtgtaccggaggatttcgatgttgtgagaataaccaaatctctccttgaatc |
228 |
Q |
| |
|
|||| ||| ||| ||| |||||| | |||||||| ||| || ||||| ||||||| |||||||||||||| |
|
|
| T |
9849783 |
tgatatgagggcgtgggcttgtgtgtctgaggattttgatattttgagagtaaccaagtctctccttgaatc |
9849854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 57 - 228
Target Start/End: Original strand, 10077213 - 10077384
Alignment:
| Q |
57 |
ataataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaacgatgataaaattgaagaacattt |
156 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||| | || ||||| || ||||| |||||||||||||| ||| ||||| || | | ||||| |
|
|
| T |
10077213 |
ataataagataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgattataaagttcgataccattt |
10077312 |
T |
|
| Q |
157 |
tgatctgaaggcatggatttgtgtaccggaggatttcgatgttgtgagaataaccaaatctctccttgaatc |
228 |
Q |
| |
|
|||| || |||||||| |||||| | |||||||| ||| || ||||| ||||||| |||||||||||||| |
|
|
| T |
10077313 |
tgatttgcaggcatgggcttgtgtgtctgaggattttgatattatgagagtaaccaagtctctccttgaatc |
10077384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 57 - 228
Target Start/End: Original strand, 11769178 - 11769349
Alignment:
| Q |
57 |
ataataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaacgatgataaaattgaagaacattt |
156 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||| | || ||||| || |||||||||||||| ||||| ||| | || || || || |||| |
|
|
| T |
11769178 |
ataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgctcaacttgtctacaatgataaagaagttcaacaatattt |
11769277 |
T |
|
| Q |
157 |
tgatctgaaggcatggatttgtgtaccggaggatttcgatgttgtgagaataaccaaatctctccttgaatc |
228 |
Q |
| |
|
|||| ||||||||||| ||| || | |||||||| ||| || ||||| |||||| |||||||||||||| |
|
|
| T |
11769278 |
tgatttgaaggcatgggcttgcgtgtctgaggattttgatattatgagagtaaccaggtctctccttgaatc |
11769349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 210
Target Start/End: Original strand, 13160935 - 13161077
Alignment:
| Q |
68 |
ggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaacgatgataaaattgaagaacattttgatctgaagg |
167 |
Q |
| |
|
||||| |||||||||||||||||||| || || || ||||| || ||||| |||||| |||| || ||| | || || |||| |||||||||||||| | |
|
|
| T |
13160935 |
ggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaag |
13161034 |
T |
|
| Q |
168 |
catggatttgtgtaccggaggatttcgatgttgtgagaataac |
210 |
Q |
| |
|
||| |||||||| |||||||||||||| || ||||| |||| |
|
|
| T |
13161035 |
tctgggtttgtgtatcggaggatttcgatattctgagagtaac |
13161077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 210
Target Start/End: Original strand, 13170986 - 13171128
Alignment:
| Q |
68 |
ggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaacgatgataaaattgaagaacattttgatctgaagg |
167 |
Q |
| |
|
||||| |||||||||||||||||||| || || || ||||| || ||||| |||||| |||| || ||| | || || |||| |||||||||||||| | |
|
|
| T |
13170986 |
ggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaag |
13171085 |
T |
|
| Q |
168 |
catggatttgtgtaccggaggatttcgatgttgtgagaataac |
210 |
Q |
| |
|
||| |||||||| |||||||||||||| || ||||| |||| |
|
|
| T |
13171086 |
tctgggtttgtgtatcggaggatttcgatattctgagagtaac |
13171128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 210
Target Start/End: Original strand, 13332859 - 13333001
Alignment:
| Q |
68 |
ggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaacgatgataaaattgaagaacattttgatctgaagg |
167 |
Q |
| |
|
||||| |||||||||||||||||||| || || || ||||| || ||||| |||||| |||| || ||| | || || |||| |||||||||||||| | |
|
|
| T |
13332859 |
ggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaag |
13332958 |
T |
|
| Q |
168 |
catggatttgtgtaccggaggatttcgatgttgtgagaataac |
210 |
Q |
| |
|
||| |||||||| |||||||||||||| || ||||| |||| |
|
|
| T |
13332959 |
tctgggtttgtgtatcggaggatttcgatattctgagagtaac |
13333001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 68 - 205
Target Start/End: Original strand, 13344044 - 13344181
Alignment:
| Q |
68 |
ggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaacgatgataaaattgaagaacattttgatctgaagg |
167 |
Q |
| |
|
||||| |||||||||||||||||||| || || || ||||| || ||||| |||||| |||| || ||| | || || |||| |||||||||||||| | |
|
|
| T |
13344044 |
ggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaag |
13344143 |
T |
|
| Q |
168 |
catggatttgtgtaccggaggatttcgatgttgtgaga |
205 |
Q |
| |
|
||| |||||||| |||||||||||||| || ||||| |
|
|
| T |
13344144 |
tctgggtttgtgtatcggaggatttcgatattctgaga |
13344181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 228
Target Start/End: Complemental strand, 10434169 - 10433998
Alignment:
| Q |
57 |
ataataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaacgatgataaaattgaagaacattt |
156 |
Q |
| |
|
||||||| ||||||||||||||||||| || |||||||| | || ||||| || ||||| |||||||||||||| ||| | || || || | ||||| |
|
|
| T |
10434169 |
ataataagataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaccattt |
10434070 |
T |
|
| Q |
157 |
tgatctgaaggcatggatttgtgtaccggaggatttcgatgttgtgagaataaccaaatctctccttgaatc |
228 |
Q |
| |
|
|||| ||||||| ||| |||||| | ||||||| ||| || ||| | ||||||| |||||||||||||| |
|
|
| T |
10434069 |
tgatttgaaggcctgggcttgtgtgtctcaggattttgatattttgaaagtaaccaagtctctccttgaatc |
10433998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 269 - 339
Target Start/End: Original strand, 11769372 - 11769442
Alignment:
| Q |
269 |
agcaataatcttgatatccttcaagttgacttaatgaaacatttgatggatagaagatttttgtttgtgtt |
339 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||| |||| | |||| ||| | |||||||||||||||||| |
|
|
| T |
11769372 |
agcaataatcttgatatccttcgagttgagttaaagaaaaacttgagggagaaaagatttttgtttgtgtt |
11769442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 68 - 210
Target Start/End: Original strand, 13289620 - 13289762
Alignment:
| Q |
68 |
ggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaacgatgataaaattgaagaacattttgatctgaagg |
167 |
Q |
| |
|
||||| || ||||||||||||||||| || || || ||||| || ||||| |||||| |||| || ||| | || || |||| |||||||||||||| | |
|
|
| T |
13289620 |
ggtgtggtcgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaag |
13289719 |
T |
|
| Q |
168 |
catggatttgtgtaccggaggatttcgatgttgtgagaataac |
210 |
Q |
| |
|
||| |||||||| |||||||||||||| || ||||| |||| |
|
|
| T |
13289720 |
tctgggtttgtgtatcggaggatttcgatattttgagagtaac |
13289762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 336
Target Start/End: Original strand, 10184380 - 10184447
Alignment:
| Q |
269 |
agcaataatcttgatatccttcaagttgacttaatgaaacatttgatggatagaagatttttgtttgt |
336 |
Q |
| |
|
||||||||||||||| |||||| |||||| |||| |||||||| | ||| | ||||||||||||||| |
|
|
| T |
10184380 |
agcaataatcttgatgtccttcgagttgagttaaagaaacattcaagggagaaaagatttttgtttgt |
10184447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 5 - 340
Target Start/End: Original strand, 11484909 - 11485247
Alignment:
| Q |
5 |
gataaagatagactcgtcaatatgttggtatcagatattggaacaggcagaaataataatttaggtgttgttgcaattttgggtatgggaggcgtcggta |
104 |
Q |
| |
|
||||||||||||||| | || ||||||||||||| ||| || ||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11484909 |
gataaagatagactccttgatgtgttggtatcagactgtggtaccagcagatataataatttaggtgttgttgcaattttggttatgggaggcgtcggta |
11485008 |
T |
|
| Q |
105 |
aaacaacacttgctcaacttgtttacaacgatgataaaattgaagaacattttgatctgaaggcatggatttgtgtaccggaggatttcgatgttgtgag |
204 |
Q |
| |
|
|||| || ||||| |||||||||||||||||||| ||| ||||| | ||||||||||| || |||||| |||||||| |||||||||||||||| ||||| |
|
|
| T |
11485009 |
aaacgacccttgcacaacttgtttacaacgatgaaaaagttgaacagcattttgatctcaaagcatgggtttgtgtatcggaggatttcgatgtcgtgag |
11485108 |
T |
|
| Q |
205 |
aataaccaaatctctccttgaatctgttgttagaaatacaacatctgtcaattcaatggt---ggaaagcaataatcttgatatccttcaagttgactta |
301 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||| ||||| ||||||||||||| || ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
11485109 |
gataaccaagtccctccttgaatctgttgttagaaacacaacgtctgtcaattcaaaagtctgggaaagcaataatcttgatatccttcaagttgaatta |
11485208 |
T |
|
| Q |
302 |
atgaaacatttgatggatagaagatttttgtttgtgttg |
340 |
Q |
| |
|
||||| ||||||| |||||||||| |||||||||||||| |
|
|
| T |
11485209 |
atgaagcatttgaaggatagaagaattttgtttgtgttg |
11485247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 3 - 340
Target Start/End: Complemental strand, 44957885 - 44957548
Alignment:
| Q |
3 |
atgataaagatagactcgtcaatatgttggtatcagatattggaacaggcagaaataataatttaggtgttgttgcaattttgggtatgggaggcgtcgg |
102 |
Q |
| |
|
||||||||||||||||| | ||||| |||||||||| | | || |||||||||||||||||||||||||||| | || ||||||||||| ||||| |
|
|
| T |
44957885 |
atgataaagatagactcatagatatgctggtatcagaca---gcaccagcagaaataataatttaggtgttgttgccaccttaggtatgggaggtgtcgg |
44957789 |
T |
|
| Q |
103 |
taaaacaacacttgctcaacttgtttacaacgatgataaaa-ttgaagaacattttgatctgaaggcatggatttgtgtaccggaggatttcgatgttgt |
201 |
Q |
| |
|
|||||| || || || |||||||||||||| ||| |||||| ||||| ||||||| ||||| || |||||||| |||||| | ||||||||| ||||||| |
|
|
| T |
44957788 |
taaaacgactctcgcacaacttgtttacaatgat-ataaaagttgaacaacatttcgatctcaaagcatggatatgtgtatcagaggatttcaatgttgt |
44957690 |
T |
|
| Q |
202 |
gagaataaccaaatctctccttgaatctgttgttagaaatacaacatctgtcaattcaa---tggtggaaagcaataatcttgatatccttcaagttgac |
298 |
Q |
| |
|
|||||||| || ||||| ||||||| |||||||||||| ||||||| |||| |||||| || ||||||| ||||||||||||||||||||||||| |
|
|
| T |
44957689 |
tagaataacaaagtctcttcttgaatgtgttgttagaaaaacaacatatgtcgattcaaatgtgtgggaaagcgataatcttgatatccttcaagttgaa |
44957590 |
T |
|
| Q |
299 |
ttaatgaaacatttgatggatagaagatttttgtttgtgttg |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44957589 |
ttaatgaaacatttgatggatagaagatttttgtttgtgttg |
44957548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 148; Significance: 5e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 2 - 340
Target Start/End: Complemental strand, 17853124 - 17852783
Alignment:
| Q |
2 |
gatgataaagatagactcgtcaatatgttggtatcagatattggaacaggcagaaataataatttaggtgttgttgcaattttgggtatgggaggcgtcg |
101 |
Q |
| |
|
||||||||| ||||||| |||| |||| |||||||||| || || || ||| |||||| |||||||||||||||||||| ||||| |||||||| |||| |
|
|
| T |
17853124 |
gatgataaaaatagacttgtcagtatgctggtatcagacataggcaccagcataaataacaatttaggtgttgttgcaatattggggatgggaggtgtcg |
17853025 |
T |
|
| Q |
102 |
gtaaaacaacacttgctcaacttgtttacaacgatgataaaattgaagaacattttgatctgaaggcatggatttgtgtaccggaggatttcgatgttgt |
201 |
Q |
| |
|
||||||| || ||||| || ||||||||||| ||||| || ||||| | ||||||||||| || || ||| |||||||| | || ||||| |||||||| |
|
|
| T |
17853024 |
gtaaaacgacccttgcacagcttgtttacaatgatgaaaaggttgaacatcattttgatctcaaagcctgggtttgtgtatcagaagattttgatgttgt |
17852925 |
T |
|
| Q |
202 |
gagaataaccaaatctctccttgaatctgttgttagaaatacaacatctgtcaattcaatggt---ggaaagcaataatcttgatatccttcaagttgac |
298 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||||||||||| || ||||| ||| ||||||| |||||||||||||||| | |||||| |
|
|
| T |
17852924 |
gagagtaaccaagtctctccttgaatctgttgttagaaatacaacatttgctgcttcaaaggtctgggaaagcgataatcttgatatcctccgagttgaa |
17852825 |
T |
|
| Q |
299 |
ttaatgaaacatttgatggatagaagatttttgtttgtgttg |
340 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
17852824 |
ttaatgaaacaattgatggatagaagatttttgtttgtgttg |
17852783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 57 - 228
Target Start/End: Original strand, 26906841 - 26907012
Alignment:
| Q |
57 |
ataataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaacgatgataaaattgaagaacattt |
156 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||| | || ||||| || ||||| |||||| ||||||| ||| | || || || ||||| |
|
|
| T |
26906841 |
ataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcccaacttctttacaatgataaagaagttcaacggcattt |
26906940 |
T |
|
| Q |
157 |
tgatctgaaggcatggatttgtgtaccggaggatttcgatgttgtgagaataaccaaatctctccttgaatc |
228 |
Q |
| |
|
|||| ||||||||||| ||||||| | |||||||| ||| || ||||| |||||||||||||||||||||| |
|
|
| T |
26906941 |
tgatttgaaggcatgggtttgtgtgtctgaggattttgatattatgagagtaaccaaatctctccttgaatc |
26907012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 210
Target Start/End: Complemental strand, 136002 - 135860
Alignment:
| Q |
68 |
ggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaacgatgataaaattgaagaacattttgatctgaagg |
167 |
Q |
| |
|
||||| |||||||||||||||||||| || || || ||||| || ||||| |||||| |||| || ||| | || || |||| |||||||||||||| | |
|
|
| T |
136002 |
ggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaag |
135903 |
T |
|
| Q |
168 |
catggatttgtgtaccggaggatttcgatgttgtgagaataac |
210 |
Q |
| |
|
||| |||||||| |||||||||||||| || ||||| |||| |
|
|
| T |
135902 |
tctgggtttgtgtatcggaggatttcgatattctgagagtaac |
135860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 210
Target Start/End: Complemental strand, 146053 - 145911
Alignment:
| Q |
68 |
ggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaacgatgataaaattgaagaacattttgatctgaagg |
167 |
Q |
| |
|
||||| |||||||||||||||||||| || || || ||||| || ||||| |||||| |||| || ||| | || || |||| |||||||||||||| | |
|
|
| T |
146053 |
ggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaag |
145954 |
T |
|
| Q |
168 |
catggatttgtgtaccggaggatttcgatgttgtgagaataac |
210 |
Q |
| |
|
||| |||||||| |||||||||||||| || ||||| |||| |
|
|
| T |
145953 |
tctgggtttgtgtatcggaggatttcgatattctgagagtaac |
145911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 31679845 - 31679783
Alignment:
| Q |
70 |
tgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaa |
132 |
Q |
| |
|
||||||| ||||||| || |||||||| |||||||||||| | || ||||||||| ||||||| |
|
|
| T |
31679845 |
tgttgtttcaattttcggcatgggaggtgtcggtaaaacagccctagctcaacttctttacaa |
31679783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 18385 - 18437
Alignment:
| Q |
84 |
tgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaacgat |
136 |
Q |
| |
|
|||| ||||||||| | ||||||||||| |||||| ||||| ||||||||||| |
|
|
| T |
18385 |
tgggaatgggaggcttgggtaaaacaactcttgctaaacttctttacaacgat |
18437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 231
Target Start/End: Original strand, 825870 - 826026
Alignment:
| Q |
75 |
ttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaacgatgataaaattgaagaacattttgatctgaaggcatggat |
174 |
Q |
| |
|
|||||||||| ||| ||||| || |||||| | |||||||||| |||||||||||| ||| | ||| |||| || ||||||||| |||| | ||| | |
|
|
| T |
825870 |
ttgcaattttaggtgatggaggtgttggtaaatcgacacttgctcgacttgtttacaatgataagaaagttgatgagcattttgatttgaaagtctgggt |
825969 |
T |
|
| Q |
175 |
ttgtgtaccggaggatttcgatgttgtgagaataaccaaatctctccttgaatctgt |
231 |
Q |
| |
|
|||||| | |||||||| ||| || ||||| || ||| |||| ||||||||||| |
|
|
| T |
825970 |
ttgtgtcaccgaggattttgatatttctagaatcacaaaagctctacttgaatctgt |
826026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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