View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8809_low_3 (Length: 291)
Name: NF8809_low_3
Description: NF8809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8809_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 9 - 278
Target Start/End: Complemental strand, 40381642 - 40381376
Alignment:
| Q |
9 |
atgatatgattgtgatactacttttgcatatcttgaaaaccacattataattggttaatttttaatgtttcacacagagagcttttgtatcagctctgtg |
108 |
Q |
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| T |
40381642 |
atgatatgattgtgatactacttt-gcatatcttgaaaatcacattataattgattaatttttaatgtttcaca--gagagcttttgtatcagctctgtg |
40381546 |
T |
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| Q |
109 |
cagggttgtcctttttacttgctccctctgcatttaaggaaagatgaacctatattacttggtcatttcaattattctttagattccatcatccatgtaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40381545 |
cagggttgtcctttttacttgctccctctgcattcaaggaaagatgaacctatattacttggtcatttcaattattctttaggttccatcatccatgtaa |
40381446 |
T |
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| Q |
209 |
tttcaaaactatatttcttgttcttaattttcaattacttgcaaattagagagccacttcagtttcaact |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40381445 |
tttcaaaactatatttcttgttcttaattttcaattacttgcaaattagagagccacttcagtttcaact |
40381376 |
T |
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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 215 - 278
Target Start/End: Complemental strand, 22810034 - 22809971
Alignment:
| Q |
215 |
aactatatttcttgttcttaattttcaattacttgcaaattagagagccacttcagtttcaact |
278 |
Q |
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| T |
22810034 |
aactatacttcttgttcttacttatcaattacttgcaaattagagagccacttcagcttcaact |
22809971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 22812209 - 22812162
Alignment:
| Q |
9 |
atgatatgattgtgatactacttttgcatatcttgaaaaccacattat |
56 |
Q |
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| T |
22812209 |
atgatatgagtgtgatactacttttgcatatcttgaaaaccacattat |
22812162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 22793913 - 22793867
Alignment:
| Q |
126 |
cttgctccctctgcatttaaggaaagatgaacctatattacttggtc |
172 |
Q |
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|||||||||||| |||||||||| ||||||| | ||||||||||||| |
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| T |
22793913 |
cttgctccctctacatttaaggatagatgaatccatattacttggtc |
22793867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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