View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8809_low_4 (Length: 235)
Name: NF8809_low_4
Description: NF8809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8809_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 40381713 - 40381934
Alignment:
| Q |
1 |
ctatggtttggtttactgtcagttatgagcattgagaatcagacccttcaaaaatggtaacctcaatatctttaggacttattggtatatcattgtttgc |
100 |
Q |
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| T |
40381713 |
ctatggtttggtttactgtcagttatgagcattgagaatcagacccttcaaaaatggtaacctcaatatctttaggacttattggtatatcattgtttgc |
40381812 |
T |
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| Q |
101 |
tgtattgtccaaattttgagtgttcaattggccaccactacttgtcttctgatgttggtcaaacatcatttgcaacttccttccttgttcctctattcgc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||| |
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| T |
40381813 |
tgtattgtccaaattttgagtgttcaattggccaccactacttgtcttctgatgttggtcaaacatcatcttcaacttccttccttattcctctattcgc |
40381912 |
T |
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| Q |
201 |
aactgtaattttctctgcttct |
222 |
Q |
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||||||||||||||||| |||| |
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| T |
40381913 |
aactgtaattttctctgattct |
40381934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 2 - 213
Target Start/End: Original strand, 22812279 - 22812490
Alignment:
| Q |
2 |
tatggtttggtttactgtcagttatgagcattgagaatcagacccttcaaaaatggtaacctcaatatctttaggacttattggtatatcattgtttgct |
101 |
Q |
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| T |
22812279 |
tatggtttggttttctgtcagttatgagtattgagaatgagacccttcaaaaatggtaacctcaatatctttaggactaattggtgtatcattgtttggt |
22812378 |
T |
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| Q |
102 |
gtattgtccaaattttgagtgttcaattggccaccactacttgtcttctgatgttggtcaaacatcatttgcaacttccttccttgttcctctattcgca |
201 |
Q |
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||||||||||||||||||||||||||||||| | |||| |||||||||| ||||||||||||||||| | ||||| | ||||||||||||||||||||| |
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| T |
22812379 |
gtattgtccaaattttgagtgttcaattggcaagtactatttgtcttctgttgttggtcaaacatcatcttcaactgctttccttgttcctctattcgca |
22812478 |
T |
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| Q |
202 |
actgtaattttc |
213 |
Q |
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|||||||||||| |
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| T |
22812479 |
actgtaattttc |
22812490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 44 - 166
Target Start/End: Original strand, 22809496 - 22809618
Alignment:
| Q |
44 |
cccttcaaaaatggtaacctcaatatctttaggacttattggtatatcattgtttgctgtattgtccaaattttgagtgttcaattggccaccactactt |
143 |
Q |
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|||||||||||| | || |||| |||||||||| || ||||| |||||||||||| |||| |||||||||| ||||||||| |||||||| ||||||| |
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| T |
22809496 |
cccttcaaaaattgaaatctcagtatctttaggcctgtttggtttatcattgtttgatgtaatgtccaaattccgagtgttcatttggccactactactt |
22809595 |
T |
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| Q |
144 |
gtcttctgatgttggtcaaacat |
166 |
Q |
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||||||| |||||||||||||| |
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| T |
22809596 |
ctcttctgctgttggtcaaacat |
22809618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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