View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8809_low_6 (Length: 228)
Name: NF8809_low_6
Description: NF8809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8809_low_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 6932618 - 6932859
Alignment:
| Q |
1 |
cacaacattgacatcgacatgtagactctggtaagaatttacgaaaatgaaagtgattgtatgtaaccaccagtgtttatcatgtcggtgtcggaca--- |
97 |
Q |
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| T |
6932618 |
cacaacattgacatcaacatgtagactctggtaagaatttacgaaaatggaagtgattgtatgtaaccacaagtgtttatcatgtcggtgtcggacactc |
6932717 |
T |
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| Q |
98 |
-----------agcatttgtgatacatagatcctaaccgatatataaaattttcaaggattgaaatgcgatggatgtagaactcatcaagcggcataagg |
186 |
Q |
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| T |
6932718 |
aaaatacaccaagcgtttgtgatacatagatcctaaccgatatataaaattttcaaggattgaaatgcgatggatgtagaactcatcaagcggcataagg |
6932817 |
T |
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| Q |
187 |
acaaagtgatcaggcacaggattacaagcacaacagagcttc |
228 |
Q |
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| T |
6932818 |
acagagtgatcaggcacaggattacaagcacaacagagcttc |
6932859 |
T |
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