View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_high_12 (Length: 433)
Name: NF8810A_high_12
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_high_12 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 419; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 11 - 433
Target Start/End: Complemental strand, 31115427 - 31115005
Alignment:
| Q |
11 |
caaagataacataaccttagaatgatgttcaaaggataaacatgttatgcttaaaataaagcttgtcatagctaatctattaacatgttcattttggaat |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31115427 |
caaagataacataaccttagaatgatgttcaaaggataaacatgttatgcttaaaataaagcttgtcatagctaatctattaaaatgttcattttggaat |
31115328 |
T |
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| Q |
111 |
aatttaaagaaactaaacgaaacatgagaaagagagcaaatataatacaaacatcggccaaaaggcccacaacgtatatttgtacataacatatgggaag |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31115327 |
aatttaaagaaactaaacgaaacatgagaaagagagcaaatataatacaaacatcggccaaaaggcccacaacgtatatttgtacataacatatgggaag |
31115228 |
T |
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| Q |
211 |
atatgcctataaaacaacaacaagatctataatcttttcgtaaatatctgaccacccaaattctttgatatatatcgttggtcattgttgttggaaatta |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31115227 |
atatgcctataaaacaacaacaagatctataatcttttcgtaaatatctgaccacccaaattctttgatatatatcgttggtcattgttgttggaaatta |
31115128 |
T |
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| Q |
311 |
caagtgaataagggataagggtttacataaccttcgtaaataattcggccttctttgataacataaccttcgtaaataaactgctatacatagaacctca |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31115127 |
caagtgaataagggataagggtttacataaccttcgtaaataattcggccttctttgataacataaccttcgtaaataaactgctatacatagaacctca |
31115028 |
T |
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| Q |
411 |
aataaaatgatttcggccttgat |
433 |
Q |
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| T |
31115027 |
aataaaatgatttcggccttgat |
31115005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 40 - 118
Target Start/End: Original strand, 31072460 - 31072538
Alignment:
| Q |
40 |
caaaggataaacatgttatgcttaaaataaagcttgtcatagctaatctattaacatgttcattttggaataatttaaa |
118 |
Q |
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|||| |||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31072460 |
caaaagataaacaagttatgcttaaaataaaatttgcaatagctaatctattaacatgttcattttggaataacttaaa |
31072538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 31030357 - 31030438
Alignment:
| Q |
44 |
ggataaacatgttatgcttaaaataaagcttgtcatagctaatctattaacatgttcattttggaataatttaaagaaacta |
125 |
Q |
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| T |
31030357 |
ggataaacaacttatgcttaaaatataacttggcatagctaatctattaacacgttcgttttggaataatttgaagaaacta |
31030438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 31073901 - 31073980
Alignment:
| Q |
40 |
caaaggataaacatgttatgcttaaaataaagcttgtcatagctaatctattaacatgttcattttggaataatttaaag |
119 |
Q |
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| T |
31073901 |
caaagcataaacaacttatgcttaaaatataacttgccataactaatctattaacacgttagttttggaataatttaaag |
31073980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 39 - 125
Target Start/End: Original strand, 31040280 - 31040366
Alignment:
| Q |
39 |
tcaaaggataaacatgttatgcttaaaataaagcttgtcatagctaatctattaacatgttcattttggaataatttaaagaaacta |
125 |
Q |
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||||| |||||||| ||| |||||| |||||| | || |||| ||||||||||||| ||||| ||| ||||||||||||||||||| |
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| T |
31040280 |
tcaaaagataaacaagttttgcttacaataaaacctgccataaataatctattaacacgttcaatttagaataatttaaagaaacta |
31040366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 40 - 125
Target Start/End: Original strand, 33559640 - 33559725
Alignment:
| Q |
40 |
caaaggataaacatgttatgcttaaaataaagcttgtcatagctaatctattaacatgttcattttggaataatttaaagaaacta |
125 |
Q |
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|||| |||||||| ||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33559640 |
caaaagataaacaagttatgcttaaaataaaatttgccatagctaatctattaacacgttcattttggaataatttaaagaaacta |
33559725 |
T |
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