View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8810A_high_13 (Length: 413)
Name: NF8810A_high_13
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_high_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 2 - 391
Target Start/End: Complemental strand, 33447342 - 33446952
Alignment:
| Q |
2 |
ttattctcaaactcctttgagaaaattcatgactgcttcaagacgaaatccaactgctacttattgtacnnnnnnnnn-gtctatcttacaagagagaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33447342 |
ttattctcaaactcctttgagaaaattcatgactgcttcaagacgaaatccaattgctacttattgtacttttttttttgtctatcttacaagagagaaa |
33447243 |
T |
|
| Q |
101 |
aaagtcttactcattcaagatgtttttaaattacattcaaaagctaactgttacatcatgaaagcataagaacatagacaaaccgtgccggaaagggcat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33447242 |
aaagtcttactcattcaagatgtttttaaattacattcaaaagttaactgttatatcatgaaagcataagaacatagacaaaccgtgccggaaagggcat |
33447143 |
T |
|
| Q |
201 |
aggcaacaactaatggaggagaagcaaggtagtttgctcttgttaacggatgaacacgaccttcaaaatttcggtttccagaaagaacagaagcagcaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33447142 |
aggcaacaactaatggaggagaagcaaggtagtttgctcttgttaacggatgaacacgaccttcaaaatttcggtttccagaaagaacagaagcagcaat |
33447043 |
T |
|
| Q |
301 |
aatgtctgcaaaggttggaacaagaagattaaagcagggtcgtggttattaagttataaaatgaaaatgaaatatctgcattatcttaatg |
391 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
33447042 |
aatgtctgcaaaggttggaacaagaagtttaaagcagggtcgtggttattaagatataaaatgaaaaagaaatatctgtattatcttaatg |
33446952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 255
Target Start/End: Complemental strand, 9097754 - 9097684
Alignment:
| Q |
185 |
gtgccggaaagggcataggcaacaactaatggaggagaagcaaggtagtttgctcttgttaacggatgaac |
255 |
Q |
| |
|
||||||| |||||||||||||||||| | ||||||||||| |||||||| || || ||||| |||||||| |
|
|
| T |
9097754 |
gtgccggcaagggcataggcaacaacgagaggaggagaagctaggtagttagccctcgttaatggatgaac |
9097684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University