View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_high_2 (Length: 656)
Name: NF8810A_high_2
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 577; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 16 - 633
Target Start/End: Complemental strand, 6605284 - 6604668
Alignment:
| Q |
16 |
gacatcatattttgagtgatttccctttcttgtaagtaaattaactcggacacttatttactcaataggctacttattttcatattaaatattaatggac |
115 |
Q |
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| T |
6605284 |
gacatcatattttgagtgatttccctttcttgtaagtaaattaactcggacacttatttactcaataggctacttattttcatattaaatattaatggac |
6605185 |
T |
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| Q |
116 |
aataaacattgcttatttagtgagatagttggttggtttaattaggctgagatagttataataaataaagtgagaagtatgcaccaggaaggtttttctc |
215 |
Q |
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| T |
6605184 |
aataaacattgcttatttagtgagatagttggttggtttaattaggctgagatagttataataaataaagtgagaagtatgcaccaggaaggtttttctc |
6605085 |
T |
|
| Q |
216 |
caggatgctccattcttgctgtaccttttttgcccaatctttcttaacctgcaaaggagcaaaggagaggnnnnnnnngtatgccaaaatgctttcaata |
315 |
Q |
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| T |
6605084 |
caggatgctccattcttgctgtaccttttttgcccaatctttcttaacctacaaaggagcaaaggagagggaaaaaa-gtatgccaaaatgctttcaata |
6604986 |
T |
|
| Q |
316 |
taattatgttacttaagtgatgtgtcaattttataacctgagatatcggcacccttttctctcattgaaaaagtggtgatctgaacatgtatcaattaca |
415 |
Q |
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| T |
6604985 |
taattatgttacttaagtgatgtgtcaattttataacctgagatatcggcacccttttctctcattgaaaaagtggtgatctgaacaagtatcaattaca |
6604886 |
T |
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| Q |
416 |
tcaaaccgcttcaactgatccgaaccattgctgtctgaagaaactggagcatcgctcctctcacgaatcctaataacttcacaataaggagttgagtctt |
515 |
Q |
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| T |
6604885 |
tcaaaccgcttcaactgatccgaaccattgctgtctgaagaaactggagcatcgctcctctcacgaatcctaataacttcacaataaggagttgagtctt |
6604786 |
T |
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| Q |
516 |
cagtagactgcaacctgctcgcaggatgtgaatcagtctcagagccacaagtttccaaatctttcttgtcgagaaaatcaggcgcatttccctcttcaaa |
615 |
Q |
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| T |
6604785 |
cagtagactgcaacctgctcgcaggatgtgaatcagtctcagggccacaagtttccaaatctttcttgtcgagaaaatcaggcgcatttccctcttcaaa |
6604686 |
T |
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| Q |
616 |
tgtagggactgtggaaac |
633 |
Q |
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| T |
6604685 |
tgtagggactgtggaaac |
6604668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 190 - 245
Target Start/End: Complemental strand, 35442638 - 35442583
Alignment:
| Q |
190 |
aagtatgcaccaggaaggtttttctccaggatgctccattcttgctgtaccttttt |
245 |
Q |
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| T |
35442638 |
aagtatgtaccaggaagacttttctcaaggatgctccattcttgctgaaccttttt |
35442583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 21 - 633
Target Start/End: Original strand, 3698258 - 3698869
Alignment:
| Q |
21 |
catattttgagtgatttccctttcttgtaagtaaattaactcggacacttatttactcaataggctacttattttcatattaaatattaatggacaataa |
120 |
Q |
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||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
3698258 |
catatttcgagtgatttccctttcttgcaagtaaattaactcggacatttatttactcaataggctacttattttcagattaaatattaattgacaataa |
3698357 |
T |
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| Q |
121 |
acattgcttatttagtgagatagtt-ggttggtttaattaggctgagatagttataataaataaagtgagaagtatgcaccaggaaggtttttctccagg |
219 |
Q |
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||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3698358 |
acattgcttatttagtgagatagtttggttggtttaatttgactgagatagttataataa-taaagtgagaagtatgcaccaggaaggtttttctccagg |
3698456 |
T |
|
| Q |
220 |
atgctccattcttgctgtaccttttttgcccaatctttcttaacctgcaaaggagcaaaggagaggnnnnnnnngtatgccaaaatgctttcaatataat |
319 |
Q |
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| T |
3698457 |
atgctccattcttgctgtaccttttttgcccaatctttcttaacctacaaaggagcaaaggagagggaaaaaa--taagccaaaatgctttcaatataat |
3698554 |
T |
|
| Q |
320 |
tatgttacttaagtgatgtgtcaattttataacctgagatatcggca-cccttttctctcattgaaaaagtggtgatctgaacatgtatcaattacatca |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
3698555 |
tatgttacttaagtgatgtgtcaattttataacctgagatattggcaacccttttctctcattgaaaaagtggtgatctaaacaagtatcaattacatca |
3698654 |
T |
|
| Q |
419 |
aaccgcttcaactgatccgaaccattgctgtctgaagaaactggagcatcgctcctctcacgaatcctaataacttcacaataaggagttgagtcttcag |
518 |
Q |
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||||||||||||||||| ||||||||||||||| ||||||| |||||| |||||||||| |||||||||||||||||| ||| ||||||| |||||||| |
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| T |
3698655 |
aaccgcttcaactgatctgaaccattgctgtctaaagaaaccggagcactgctcctctcatgaatcctaataacttcaccatatggagttgggtcttcag |
3698754 |
T |
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| Q |
519 |
tagactgcaacctgctcgcaggatgtgaatcagtctcagagccacaagtttccaaatctttcttgtcgagaaaatcaggcgcatttccctcttcaaatgt |
618 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||| |
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| T |
3698755 |
tagactgcaacctgctcgcaggatgtgaatcagtctcagggccacaagtttccaaatctttcttgtcaacaaaatcgggcgcatttccctcttcaaatgt |
3698854 |
T |
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| Q |
619 |
agggactgtggaaac |
633 |
Q |
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||||||||||||||| |
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| T |
3698855 |
agggactgtggaaac |
3698869 |
T |
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