View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_high_30 (Length: 212)
Name: NF8810A_high_30
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 35 - 192
Target Start/End: Original strand, 10402836 - 10402993
Alignment:
| Q |
35 |
aatatcactcaaacaagccttgcaatcatcacttgataaatcttgtgtacactgaccaagtgtataaagtgtttgcaaatcattcaatttcaatgatttt |
134 |
Q |
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| T |
10402836 |
aatatcactcaaacaagccttgcaatcatcacttgataaatcttgtgtacactgaccaagtgtataaagtgtttgcaaatcattcaatttcaatgatttt |
10402935 |
T |
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| Q |
135 |
gttccatatctcttatcactatccccagctacaattgccacttttgataaggcatttg |
192 |
Q |
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| T |
10402936 |
gttccatatctcttatcactatccccagccacaattgccacttttgataaggcatttg |
10402993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 44 - 186
Target Start/End: Complemental strand, 20232072 - 20231930
Alignment:
| Q |
44 |
caaacaagccttgcaatcatcacttgataaatcttgtgtacactgaccaagtgtataaagtgtttgcaaatcattcaatttcaatgattttgttccatat |
143 |
Q |
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| T |
20232072 |
caaacaacctttgcaatcatcacttgacaaatcttgtgtacattgaccaagtgtataaagtgtttgcaaatcattcactttcagtgattttgttccaaat |
20231973 |
T |
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| Q |
144 |
ctcttatcactatccccagctacaattgccacttttgataagg |
186 |
Q |
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| T |
20231972 |
ctttcatcactatctcctgccacaattgccacatttgataagg |
20231930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 44 - 186
Target Start/End: Complemental strand, 22126056 - 22125914
Alignment:
| Q |
44 |
caaacaagccttgcaatcatcacttgataaatcttgtgtacactgaccaagtgtataaagtgtttgcaaatcattcaatttcaatgattttgttccatat |
143 |
Q |
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||||||| | ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||| || |
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| T |
22126056 |
caaacaacctttgcaatcatcacttgacaaatcttgtgtacattgaccaagtgtataaagtgtttgcaaatcattcactttcagtgattttgttccaaat |
22125957 |
T |
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| Q |
144 |
ctcttatcactatccccagctacaattgccacttttgataagg |
186 |
Q |
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|| | ||||||||| || || ||||||||||| |||||||||| |
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| T |
22125956 |
ctttcatcactatctcctgccacaattgccacatttgataagg |
22125914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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