View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8810A_high_4 (Length: 570)
Name: NF8810A_high_4
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 137 - 539
Target Start/End: Original strand, 12827141 - 12827540
Alignment:
| Q |
137 |
ttacctgagtaacaattctaaccgaagaagattcaacttcagaatacctatcacaaaccgcaccagaagaaccaaacaactcccctttcaactccaccga |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12827141 |
ttacctgagtaacaattctaaccgaagaagattcaacttcagaatacctatcacaaaccgcaccagaagaaccaaacaactcccctttcaactccaccga |
12827240 |
T |
|
| Q |
237 |
aatcgtcgcacacttctgcaatgctttaccaaccaaatcatcttcatttgcgtcttcgatatcttcctcaatttcatcttcagttgaatcaatctcatac |
336 |
Q |
| |
|
|||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12827241 |
aatcctcgcacacttttgcaaagctttaccaaccaaatcatcttcatttgcgtcttcaatatcttcctcaatttcatcttcagttgaatcaatctcatac |
12827340 |
T |
|
| Q |
337 |
aaatccacaccaccactacctccggcatcctcttcatcctcatcatctataataaacccccgtccaggtttcgccgccggagcagcagccgccgcatcat |
436 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
12827341 |
aaatccacaccaccactacctccggcatcctcttcatcctcatcatctataataaacctccgtccaggtttcgctgccggagcagcagccgccg---cat |
12827437 |
T |
|
| Q |
437 |
cacattcagcatcatctaattcatcaaggatattatcggtatttcgcgttatttcaacacaatcgtcgtcgtcggaaacggttacagaagaaggaggagg |
536 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
12827438 |
cacattcagcatcatctaattcatcaaggatattatcggtatttcgcgttatttcgacacaatcgtcgtcgtcagaaacggtcacagaagaaggaggagg |
12827537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 12827053 - 12827096
Alignment:
| Q |
19 |
acatcaacatcatcctacaaataaccacacaatcaatcacactt |
62 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12827053 |
acatcaacatcatcctacaaataaccacacaatcaatcacactt |
12827096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University