View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8810A_low_10 (Length: 526)

Name: NF8810A_low_10
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8810A_low_10
NF8810A_low_10
[»] chr1 (5 HSPs)
chr1 (115-516)||(5278405-5278806)
chr1 (347-516)||(30651111-30651272)
chr1 (454-494)||(12656852-12656892)
chr1 (385-430)||(8397857-8397902)
chr1 (370-422)||(44889197-44889249)
[»] chr3 (7 HSPs)
chr3 (115-516)||(20848007-20848408)
chr3 (114-415)||(1118291-1118592)
chr3 (370-433)||(35503837-35503900)
chr3 (412-494)||(7516454-7516536)
chr3 (373-430)||(31050585-31050642)
chr3 (410-491)||(44665577-44665658)
chr3 (258-330)||(30406158-30406230)
[»] chr2 (3 HSPs)
chr2 (115-516)||(26678308-26678709)
chr2 (114-516)||(10290314-10290716)
chr2 (376-497)||(32991767-32991888)
[»] chr6 (5 HSPs)
chr6 (115-516)||(6017562-6017963)
chr6 (115-516)||(5696600-5697001)
chr6 (133-516)||(25036448-25036831)
chr6 (114-516)||(8643655-8644055)
chr6 (454-490)||(14362058-14362094)
[»] chr5 (4 HSPs)
chr5 (114-462)||(31759200-31759548)
chr5 (370-430)||(31124176-31124236)
chr5 (452-495)||(23409569-23409612)
chr5 (370-422)||(6612295-6612347)
[»] chr7 (5 HSPs)
chr7 (114-377)||(36438818-36439065)
chr7 (151-498)||(34792960-34793297)
chr7 (7-102)||(49125189-49125284)
chr7 (114-171)||(40076762-40076819)
chr7 (376-428)||(37237931-37237983)
[»] chr4 (3 HSPs)
chr4 (114-516)||(4372714-4373116)
chr4 (331-509)||(12715942-12716120)
chr4 (369-422)||(5634773-5634826)


Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 115 - 516
Target Start/End: Complemental strand, 5278806 - 5278405
Alignment:
Q  115 agaaatcaaaatgaaatataatataaacgacagccaatcttcacggcataaggtgtaccgttgaagaccgcccaaaagttacaaacaagttcagatagag 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||     
T  5278806 agaaatcaaaatgaaatataatataaacgacagccaatcttcacggcacaaggtgtaccactgaagaccgcccaaaagttacaaacaagttcagatagaa 5278707  T
Q  215 caaacaaaaatcaaccaatgcccgcacaaaggaacggggccttgcaccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaaa 314  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5278706 caaacaaaaatcaactaatgcccgcacaaaggaacggggcctagcaccaatcatgaaaacaataaggaaatacagtaaatttaaccttaaaccaccaaaa 5278607  T
Q  315 cgagagaaatttaatagcctccaacatttgataatgagaacgttcttgaccacgaaaaatcctgtcattcctttctttccatatctcccatacagttgca 414  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5278606 cgagagaagtttaatggcctccaacatttgataatgagaacgttcttgaccacgaaaaattctgtcattcctttctttccatatctcccatacagttgca 5278507  T
Q  415 aaccaaatcaaatgcataagtgagcatcttaattttccgtaacctgaagaagtgccaaactgatgaaaatgatccacaatgttacccggatccgcagaat 514  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5278506 aaccaaatcaaatgcttaagagagcatcttaattttccgtaacctgaagaagtgccaaactgatgaaaatgatccacaatgttacccggatccgcagaat 5278407  T
Q  515 aa 516  Q
    ||    
T  5278406 aa 5278405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 347 - 516
Target Start/End: Complemental strand, 30651272 - 30651111
Alignment:
Q  347 aatgagaacgttcttgaccacgaaaaatcctgtcattcctttctttccatatctcccatacagttgcaaaccaaatcaaatgcataagtgagcatcttaa 446  Q
    ||||||||| |||||||||  | |||||| ||||||||||||||||||||| | |||| | ||| ||||| |||||||||||||||||        || |    
T  30651272 aatgagaacattcttgaccgtggaaaatcatgtcattcctttctttccataacacccacagagtagcaaatcaaatcaaatgcataag--------ttga 30651181  T
Q  447 ttttccgtaacctgaagaagtgccaaactgatgaaaatgatccacaatgttacccggatccgcagaataa 516  Q
    |||||| ||||  || |||| ||||||||| | ||||||||| ||||||||||| ||||| || ||||||    
T  30651180 ttttccataactcgacgaagagccaaactggtaaaaatgatctacaatgttaccgggatcagcggaataa 30651111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 494
Target Start/End: Complemental strand, 12656892 - 12656852
Alignment:
Q  454 taacctgaagaagtgccaaactgatgaaaatgatccacaat 494  Q
    |||| ||||||||| ||||||||||||||||||||||||||    
T  12656892 taacatgaagaagtaccaaactgatgaaaatgatccacaat 12656852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 430
Target Start/End: Original strand, 8397857 - 8397902
Alignment:
Q  385 ctttctttccatatctcccatacagttgcaaaccaaatcaaatgca 430  Q
    |||| ||||||||| ||||| ||||| |||||||||||||||||||    
T  8397857 ctttatttccatatttcccacacagtagcaaaccaaatcaaatgca 8397902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 370 - 422
Target Start/End: Original strand, 44889197 - 44889249
Alignment:
Q  370 aaaatcctgtcattcctttctttccatatctcccatacagttgcaaaccaaat 422  Q
    ||||| |||| ||| |||||||||||||| ||||| ||||| |||||||||||    
T  44889197 aaaattctgttatttctttctttccatatttcccaaacagtagcaaaccaaat 44889249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 115 - 516
Target Start/End: Original strand, 20848007 - 20848408
Alignment:
Q  115 agaaatcaaaatgaaatataatataaacgacagccaatcttcacggcataaggtgtaccgttgaagaccgcccaaaagttacaaacaagttcagatagag 214  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||     
T  20848007 agaaatcaaaatgaaatataatataaacgacaaccaatcttcacggcacaaggtgtaccattgaagaccgcccaaaagttacaaacaagttcagatagaa 20848106  T
Q  215 caaacaaaaatcaaccaatgcccgcacaaaggaacggggccttgcaccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaaa 314  Q
    ||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20848107 caaacaaaaatcaactaatgcccgcacaaaggaacggggcctgacaccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaaa 20848206  T
Q  315 cgagagaaatttaatagcctccaacatttgataatgagaacgttcttgaccacgaaaaatcctgtcattcctttctttccatatctcccatacagttgca 414  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  20848207 cgagagaagtttaatggcctccaacatttgataatgagaacgttcttgaccacgaaaaattctgtcattcctttctttccatatttcccatacagttgca 20848306  T
Q  415 aaccaaatcaaatgcataagtgagcatcttaattttccgtaacctgaagaagtgccaaactgatgaaaatgatccacaatgttacccggatccgcagaat 514  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20848307 aaccaaatcaaatgcataagagaacatcttaattttccgtaacctgaagaagtgccaaactgatgaaaatgatccacaatgttacccggatccgcagaat 20848406  T
Q  515 aa 516  Q
    ||    
T  20848407 aa 20848408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 114 - 415
Target Start/End: Original strand, 1118291 - 1118592
Alignment:
Q  114 aagaaatcaaaatgaaatataatataaacgacagccaatcttcacggcataaggtgtaccgttgaagaccgcccaaaagttacaaacaagttcagataga 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| | |||    
T  1118291 aagaaatcaaaatgaaatataatataaacgacagccaatcttcacggcacaaggtgtaccattgaagaccgcccaaaagttacaaacaagttcaaacaga 1118390  T
Q  214 gcaaacaaaaatcaaccaatgcccgcacaaaggaacggggccttgcaccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaa 313  Q
    |||| ||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1118391 gcaatcaaaaatcaaccaatgcccgcacaaaggaacggggtctgacaccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaa 1118490  T
Q  314 acgagagaaatttaatagcctccaacatttgataatgagaacgttcttgaccacgaaaaatcctgtcattcctttctttccatatctcccatacagttgc 413  Q
    | |||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||    
T  1118491 aagaggaaagtttaatagcctccaacatttgataatgagaacgttcttgaccacgaaaaatcctgtcattcatttctttccataactcccataccgttgc 1118590  T
Q  414 aa 415  Q
    ||    
T  1118591 aa 1118592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 370 - 433
Target Start/End: Complemental strand, 35503900 - 35503837
Alignment:
Q  370 aaaatcctgtcattcctttctttccatatctcccatacagttgcaaaccaaatcaaatgcataa 433  Q
    |||||||||| ||| |||||||||||||| ||||| ||||| ||||||||||| ||||||||||    
T  35503900 aaaatcctgttatttctttctttccatatttcccaaacagtagcaaaccaaattaaatgcataa 35503837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 412 - 494
Target Start/End: Original strand, 7516454 - 7516536
Alignment:
Q  412 gcaaaccaaatcaaatgcataagtgagcatcttaattttccgtaacctgaagaagtgccaaactgatgaaaatgatccacaat 494  Q
    ||||||||||||| ||||||||| || ||||   ||||||| || ||||||||||| ||||||||||  ||||||||||||||    
T  7516454 gcaaaccaaatcagatgcataagcgaacatcgagattttccatagcctgaagaagtaccaaactgatagaaatgatccacaat 7516536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 430
Target Start/End: Complemental strand, 31050642 - 31050585
Alignment:
Q  373 atcctgtcattcctttctttccatatctcccatacagttgcaaaccaaatcaaatgca 430  Q
    ||||||| ||| |||||||||||  | ||||| ||||| |||||||||||||||||||    
T  31050642 atcctgttatttctttctttccaggtttcccacacagtagcaaaccaaatcaaatgca 31050585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 491
Target Start/End: Original strand, 44665577 - 44665658
Alignment:
Q  410 ttgcaaaccaaatcaaatgcataagtgagcatcttaattttccgtaacctgaagaagtgccaaactgatgaaaatgatccac 491  Q
    ||||||||||||| |||||||||  |||||||||| ||||  |   ||| || ||||| ||||||||| |||||||||||||    
T  44665577 ttgcaaaccaaattaaatgcatagatgagcatcttgatttagcaagacccgaggaagtaccaaactgaagaaaatgatccac 44665658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 330
Target Start/End: Original strand, 30406158 - 30406230
Alignment:
Q  258 gcaccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaaacgagagaaatttaata 330  Q
    |||||||||||||||   |||| |||| |||  ||||||||| ||||||||| |||| || ||||||||||||    
T  30406158 gcaccaatcatgaaacttataatgaaaaacaacaaatttagctttaaaccactaaaaggaaagaaatttaata 30406230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 115 - 516
Target Start/End: Original strand, 26678308 - 26678709
Alignment:
Q  115 agaaatcaaaatgaaatataatataaacgacagccaatcttcacggcataaggtgtaccgttgaagaccgcccaaaagttacaaacaagttcagatagag 214  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||     
T  26678308 agaaatcaaaatgaaatataataaaaacgacagccaatcttcacggcacaaggtgtaccattgaagaccgcccaaaagttacaaacaagttcagatagaa 26678407  T
Q  215 caaacaaaaatcaaccaatgcccgcacaaaggaacggggccttgcaccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaaa 314  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26678408 caaacaaaaatcaactaatgcccgcacaaaggaacggggcctggcaccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaaa 26678507  T
Q  315 cgagagaaatttaatagcctccaacatttgataatgagaacgttcttgaccacgaaaaatcctgtcattcctttctttccatatctcccatacagttgca 414  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||    
T  26678508 cgagagaagtttaatggcctccaacatttgataatgagaacgttcttgaccacgaaaagttctatcattcctttctttccatatctcccatacagttgca 26678607  T
Q  415 aaccaaatcaaatgcataagtgagcatcttaattttccgtaacctgaagaagtgccaaactgatgaaaatgatccacaatgttacccggatccgcagaat 514  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26678608 aaccaaatcaaatgtataagagagcatcttaattttccgtaacctgaagaagtgccaaactgatgaaaatgatccacaatgttacccggatccgcagaat 26678707  T
Q  515 aa 516  Q
    ||    
T  26678708 aa 26678709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 114 - 516
Target Start/End: Complemental strand, 10290716 - 10290314
Alignment:
Q  114 aagaaatcaaaatgaaatataatataaacgacagccaatcttcacggcataaggtgtaccgttgaagaccgcccaaaagttacaaacaagttcagataga 213  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||| ||||| ||||||||||||||| | |||    
T  10290716 aagaaatcaaaatgaaatataatataaacgacaaccaatcttcacggcacaaggtgtaccattgaagaccgctcaaaaattacaaacaagttcaaacaga 10290617  T
Q  214 gcaaacaaaaatcaaccaatgcccgcacaaaggaacggggccttgcaccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaa 313  Q
    |||| ||||||||||||||||||||||||||||||| ||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10290616 gcaatcaaaaatcaaccaatgcccgcacaaaggaacagggtctggcaccaatcataaaaacaataaggaaatacagtaaatttagccttaaaccaccaaa 10290517  T
Q  314 acgagagaaatttaatagcctccaacatttgataatgagaacgttcttgaccacgaaaaatcctgtcattcctttctttccatatctcccatacagttgc 413  Q
    | ||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||    
T  10290516 aagagagaagtttaatagtctccaacatttgataatgagaacgttcttgaccatgaaaaatcatgtcattcctttctttccataactcccatacagttgc 10290417  T
Q  414 aaaccaaatcaaatgcataagtgagcatcttaattttccgtaacctgaagaagtgccaaactgatgaaaatgatccacaatgttacccggatccgcagaa 513  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10290416 aaaccaaatcaaatgcataagtgagcatcttgattttccgtaacctgaagaagtgccaaattgatgaaaatgatccacaatgttacccggatccgcagaa 10290317  T
Q  514 taa 516  Q
    |||    
T  10290316 taa 10290314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 376 - 497
Target Start/End: Complemental strand, 32991888 - 32991767
Alignment:
Q  376 ctgtcattcctttctttccatatctcccatacagttgcaaaccaaatcaaatgcataagtgagcatcttaattttccgtaacctgaagaagtgccaaact 475  Q
    |||||||| ||||| ||||||||| |||||   |  |||||||||||||||||||  || ||||||| | |||| ||  ||||||| || |  |||||||    
T  32991888 ctgtcatttctttccttccatatcacccatgaggaagcaaaccaaatcaaatgcaatagagagcatcgtgatttgccaaaacctgatgatgaaccaaact 32991789  T
Q  476 gatgaaaatgatccacaatgtt 497  Q
    ||||||||||||| ||||||||    
T  32991788 gatgaaaatgatcaacaatgtt 32991767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 346; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 115 - 516
Target Start/End: Original strand, 6017562 - 6017963
Alignment:
Q  115 agaaatcaaaatgaaatataatataaacgacagccaatcttcacggcataaggtgtaccgttgaagaccgcccaaaagttacaaacaagttcagatagag 214  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||     
T  6017562 agaaatcaaaatgaaatataatataaacgacaggcaatcttcacggcacaaggtgtaccattgaagaccgcccaaaagttacaaacaagttcagatagaa 6017661  T
Q  215 caaacaaaaatcaaccaatgcccgcacaaaggaacggggccttgcaccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaaa 314  Q
    ||||||||||||||| ||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6017662 caaacaaaaatcaactaatgcccacacaaaggaacggggcctgacaccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaaa 6017761  T
Q  315 cgagagaaatttaatagcctccaacatttgataatgagaacgttcttgaccacgaaaaatcctgtcattcctttctttccatatctcccatacagttgca 414  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6017762 cgagagaagtttaatggcctccaacatttgataatgagaacgttcttgatcgcgaaaaatcctgtcattcctttctttccatatctcccatacagttgca 6017861  T
Q  415 aaccaaatcaaatgcataagtgagcatcttaattttccgtaacctgaagaagtgccaaactgatgaaaatgatccacaatgttacccggatccgcagaat 514  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6017862 aaccaaatcaaatgcataagagagcatcttaattttccgtaacctgaagaagtgccaaactgataaaaatgatccacaatgttacccggatccgcagaat 6017961  T
Q  515 aa 516  Q
    ||    
T  6017962 aa 6017963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 115 - 516
Target Start/End: Complemental strand, 5697001 - 5696600
Alignment:
Q  115 agaaatcaaaatgaaatataatataaacgacagccaatcttcacggcataaggtgtaccgttgaagaccgcccaaaagttacaaacaagttcagatagag 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||| |||||||||||||||||||||||||||||      
T  5697001 agaaatcaaaatgaaatataatataaacgacagccaatcttcacggcacaaggtgtaccattcaagactgcccaaaagttacaaacaagttcagatagga 5696902  T
Q  215 caaacaaaaatcaaccaatgcccgcacaaaggaacggggccttgcaccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaaa 314  Q
    ||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5696901 caaacaaaaatcaactaatgcccgcacaaaggaacggggcctgacaccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaaa 5696802  T
Q  315 cgagagaaatttaatagcctccaacatttgataatgagaacgttcttgaccacgaaaaatcctgtcattcctttctttccatatctcccatacagttgca 414  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5696801 cgagagaagtttaatggcctccaacatttgataatgagaacgttcttgaccacgaaaaatcctgtcattcctttctttccatatctcccatacagttgca 5696702  T
Q  415 aaccaaatcaaatgcataagtgagcatcttaattttccgtaacctgaagaagtgccaaactgatgaaaatgatccacaatgttacccggatccgcagaat 514  Q
    | | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5696701 agctaaatcaaatgcataagagagcatcttaattttccgtaacctgaagaagtgccaaactgatgaaaatgatccacaatgttacccggatccgcataat 5696602  T
Q  515 aa 516  Q
    ||    
T  5696601 aa 5696600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 133 - 516
Target Start/End: Complemental strand, 25036831 - 25036448
Alignment:
Q  133 taatataaacgacagccaatcttcacggcataaggtgtaccgttgaagaccgcccaaaagttacaaacaagttcagatagagcaaacaaaaatcaaccaa 232  Q
    ||||||||||||||| |||||||||||||| |||||||| | |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  25036831 taatataaacgacagtcaatcttcacggcacaaggtgtatcattgaagaccgtccaaaagttataaacaagttcagatagagcaaacaaaaatcaaccaa 25036732  T
Q  233 tgcccgcacaaaggaacggggccttgcaccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaaacgagagaaatttaatagc 332  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||     
T  25036731 tgcccgcacaaaggaacggggcctgacaccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaaaagagagaagtttaatagt 25036632  T
Q  333 ctccaacatttgataatgagaacgttcttgaccacgaaaaatcctgtcattcctttctttccatatctcccatacagttgcaaaccaaatcaaatgcata 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25036631 ctccaacatttgataatgagaacgttcttgaccacgaaaaatcctgtcattcctttctttccatatctcccatacagttgcaaaccaaatcaaatgcata 25036532  T
Q  433 agtgagcatcttaattttccgtaacctgaagaagtgccaaactgatgaaaatgatccacaatgttacccggatccgcagaataa 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25036531 agtgagcatcttaattttccgtaacctgaagaagtgccaaactgatgaaaatgatccacaatgttacccggatccgcagaataa 25036448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 114 - 516
Target Start/End: Complemental strand, 8644055 - 8643655
Alignment:
Q  114 aagaaatcaaaatgaaatataatataaacgacagccaatcttcacggcataaggtgtaccgttgaagaccgcccaaaagttacaaacaagttcagataga 213  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||| |||||||||| ||||||||||||||   ||||| | |||    
T  8644055 aagaaatcaaaatgaaatatattataaacgacagccaatcttcacagcacaaggtgtaccattgaagaccgtccaaaagttacaaatctgttcaaacaga 8643956  T
Q  214 gcaaacaaaaatcaaccaatgcccgcacaaaggaacggggccttgcaccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaa 313  Q
    |||| |||||||||||||||||| ||||||||||| |||| || |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  8643955 gcaatcaaaaatcaaccaatgcctgcacaaaggaaaggggtctggcaccaatcatgaaaataataaggaaatacagtcaatttagccttaaaccaccaaa 8643856  T
Q  314 acgagagaaatttaatagcctccaacatttgataatgagaacgttcttgaccacgaaaaatcctgtcattcctttctttccatatctcccatacagttgc 413  Q
    | ||||||| ||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| |||||  ||||||||    
T  8643855 aagagagaagtttaataccctccaacatttgataatgagaacgttttttaccacgaaaaatcctgtcattcctttcttcccataactccc--acagttgc 8643758  T
Q  414 aaaccaaatcaaatgcataagtgagcatcttaattttccgtaacctgaagaagtgccaaactgatgaaaatgatccacaatgttacccggatccgcagaa 513  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8643757 aaaccaaatcaaatgaataagtgagcatcttgattttccgtaacctgaacaagtgccaaactgatgaaaatgatccacaatgttacccgaatccgcagaa 8643658  T
Q  514 taa 516  Q
    |||    
T  8643657 taa 8643655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 490
Target Start/End: Original strand, 14362058 - 14362094
Alignment:
Q  454 taacctgaagaagtgccaaactgatgaaaatgatcca 490  Q
    |||||||||||||| ||||||||||||||||||||||    
T  14362058 taacctgaagaagtaccaaactgatgaaaatgatcca 14362094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 114 - 462
Target Start/End: Original strand, 31759200 - 31759548
Alignment:
Q  114 aagaaatcaaaatgaaatataatataaacgacagccaatcttcacggcataaggtgtaccgttgaagaccgcccaaaagttacaaacaagttcagataga 213  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | | |    
T  31759200 aagaaatcaaaatgaaatataatataaacgacaaccaatcttcacggcataaggtgtaccattgaagaccgcccaaaagttacaaacaagttcaaacaaa 31759299  T
Q  214 gcaaacaaaaatcaaccaatgcccgcacaaaggaacggggccttgcaccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaa 313  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31759300 gcaatcaaaaatcaaccaatgcccgcacaaaggaacggggcctggcaccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaa 31759399  T
Q  314 acgagagaaatttaatagcctccaacatttgataatgagaacgttcttgaccacgaaaaatcctgtcattcctttctttccatatctcccatacagttgc 413  Q
    | ||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||| |||| |||    
T  31759400 aagagagaagtttaatagcctccaacatttgaaaatgacaacgttcttgaccacgaaaaatcctgtcattcctttctttccataattcccacacaggtgc 31759499  T
Q  414 aaaccaaatcaaatgcataagtgagcatcttaattttccgtaacctgaa 462  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||    
T  31759500 aaaccaaatcaaatacataagtgagcatcttgattttccgtaacctgaa 31759548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 370 - 430
Target Start/End: Complemental strand, 31124236 - 31124176
Alignment:
Q  370 aaaatcctgtcattcctttctttccatatctcccatacagttgcaaaccaaatcaaatgca 430  Q
    |||||||||| ||| ||||||||||| || ||||| ||||| |||||||||||||||||||    
T  31124236 aaaatcctgttatttctttctttccagatttcccacacagtagcaaaccaaatcaaatgca 31124176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 452 - 495
Target Start/End: Complemental strand, 23409612 - 23409569
Alignment:
Q  452 cgtaacctgaagaagtgccaaactgatgaaaatgatccacaatg 495  Q
    ||||||||||||| || |||||||||||||||||||||||||||    
T  23409612 cgtaacctgaagaggtaccaaactgatgaaaatgatccacaatg 23409569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 370 - 422
Target Start/End: Complemental strand, 6612347 - 6612295
Alignment:
Q  370 aaaatcctgtcattcctttctttccatatctcccatacagttgcaaaccaaat 422  Q
    |||||||||| ||| |||||||||||||| || || ||||| |||||||||||    
T  6612347 aaaatcctgttatttctttctttccatatttctcacacagtagcaaaccaaat 6612295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 171; Significance: 1e-91; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 114 - 377
Target Start/End: Original strand, 36438818 - 36439065
Alignment:
Q  114 aagaaatcaaaatgaaatataatataaacgacagccaatcttcacggcataaggtgtaccgttgaagaccgcccaaaagttacaaacaagttcagataga 213  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||| | |||    
T  36438818 aagaaatcaaaatgaaatataatataaacgacagtcaatcttcacgacacaaggtgtaccattgaagaccgcccaaaagttacaaacaagttcaaagaga 36438917  T
Q  214 gcaaacaaaaatcaaccaatgcccgcacaaaggaacggggccttgcaccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaa 313  Q
     ||| ||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36438918 acaatcaaaaatcaaccaatgcccgcacaaa----------------ccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaa 36439001  T
Q  314 acgagagaaatttaatagcctccaacatttgataatgagaacgttcttgaccacgaaaaatcct 377  Q
    | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36439002 aagagagaagtttaatagcctccaacatttgataatgagaacgttcttgaccacgaaaaatcct 36439065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 151 - 498
Target Start/End: Complemental strand, 34793297 - 34792960
Alignment:
Q  151 atcttcacggcataaggtgtaccgttgaagaccgcccaaaagttaca-aacaagttcagatagagcaaacaaaaatcaaccaatgcccgcacaaaggaac 249  Q
    ||||| |||||| |||||||||| |||||||| ||| | || | ||| || | ||||||||  ||| ||||||||||| ||||||||||||||||| ||     
T  34793297 atctttacggcacaaggtgtacctttgaagacagccaagaaat-acataatatgttcagatgtagctaacaaaaatcagccaatgcccgcacaaagaaaa 34793199  T
Q  250 ggggccttgcaccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaaacgagagaaatttaatagcctccaacatttgataat 349  Q
    ||||| | ||| |||| ||||||||||||| ||||||||  ||||||||| |||||||||||||| || || | ||||||||||||||  | ||||||||    
T  34793198 ggggcttggcatcaattatgaaaacaataacgaaatacataaaatttagctttaaaccaccaaaaggatagcagtttaatagcctccacaagttgataat 34793099  T
Q  350 gagaacgttcttgaccacgaaaaatcctgtcattcctttctttccatatctcccatacagttgcaaaccaaatcaaatgcataagtgagcatcttaattt 449  Q
    |||||||          ||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  34793098 gagaacg----------cgaaaaatcctgtcattcctttctttccataacacccatacagtagcaaaccaaatcaaatgcataagtgagcatcttgattt 34793009  T
Q  450 tccgtaacctgaagaagtgccaaactgatgaaaatgatccacaatgtta 498  Q
    ||| ||||| || |||| ||||||||| | ||||||||| | |||||||    
T  34793008 tccataacccgatgaagagccaaactggtaaaaatgatctataatgtta 34792960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 7 - 102
Target Start/End: Complemental strand, 49125284 - 49125189
Alignment:
Q  7 gttttgtccaaatttcactgtttgttacctcttttactttttcttaaagcaaattaattaataataaagcttgacgccattttagtacttattagc 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  49125284 gttttgtccaaatttcactgtttgttacctcttttactttttcttaaagtaaattaattaataataaagcttgacgccattttagtacttattagc 49125189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 114 - 171
Target Start/End: Original strand, 40076762 - 40076819
Alignment:
Q  114 aagaaatcaaaatgaaatataatataaacgacagccaatcttcacggcataaggtgta 171  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||| || |||||    
T  40076762 aagaaatcaaaatgaaatataatataaacgacaatcaatcttcacggcacaatgtgta 40076819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 376 - 428
Target Start/End: Original strand, 37237931 - 37237983
Alignment:
Q  376 ctgtcattcctttctttccatatctcccatacagttgcaaaccaaatcaaatg 428  Q
    |||| ||| |||||||| ||||| ||||| ||||| |||||||||||||||||    
T  37237931 ctgttatttctttctttacatatttcccacacagtagcaaaccaaatcaaatg 37237983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 147; Significance: 3e-77; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 114 - 516
Target Start/End: Complemental strand, 4373116 - 4372714
Alignment:
Q  114 aagaaatcaaaatgaaatataatataaacgacagccaatcttcacggcataaggtgtaccgttgaagaccgcccaaaagttacaaacaagttcagataga 213  Q
    ||||||||||||||||||||| ||  ||||||| || ||||| |||||| ||||||| ||| |||||||  || |||| |     |   |||| |||  |    
T  4373116 aagaaatcaaaatgaaatatattacgaacgacaacctatctttacggcacaaggtgtgccgctgaagacaaccaaaaaatattgtatctgttctgatgta 4373017  T
Q  214 gcaaacaaaaatcaaccaatgcccgcacaaaggaacggggccttgcaccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaa 313  Q
    |||||||||||||| |||||||| |||||||| |||| ||| | |||||||| |||||||||||||||||||||||||||||||||  ||||||||||||    
T  4373016 gcaaacaaaaatcagccaatgcctgcacaaagaaacgaggcttggcaccaataatgaaaacaataaggaaatacagtaaatttagctctaaaccaccaaa 4372917  T
Q  314 acgagagaaatttaatagcctccaacatttgataatgagaacgttcttgaccacgaaaaatcctgtcattcctttctttccatatctcccatacagttgc 413  Q
    | | | |||  |||||||||||||| | |||| || |||| ||||||||  | |  |||||| |||||||| |||| ||||||| | |||| ||| ||||    
T  4372916 atgtgtgaagcttaatagcctccaaaaattgagaaggagaccgttcttgttcgcagaaaatcatgtcattcatttccttccataacacccacacacttgc 4372817  T
Q  414 aaaccaaatcaaatgcataagtgagcatcttaattttccgtaacctgaagaagtgccaaactgatgaaaatgatccacaatgttacccggatccgcagaa 513  Q
    |||||||||||||||||||| |||||||||| ||||||| | ||||||||||||| ||||||||| ||||||||| ||||||||||| |||||||| |||    
T  4372816 aaaccaaatcaaatgcataattgagcatcttgattttccattacctgaagaagtgtcaaactgataaaaatgatctacaatgttaccgggatccgcggaa 4372717  T
Q  514 taa 516  Q
    |||    
T  4372716 taa 4372714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 331 - 509
Target Start/End: Complemental strand, 12716120 - 12715942
Alignment:
Q  331 gcctccaacatttgataatgagaacgttcttgaccacgaaaaatcctgtcattcctttctttccatatctcccatacagttgcaaaccaaatcaaatgca 430  Q
    |||||||| || |||||  |||| |||||||||||||| || | | | || |||||||| ||||||| |  ||| ||| |||||||||||||||||||||    
T  12716120 gcctccaaaatctgatagggagatcgttcttgaccacggaataacatttcgttcctttccttccataacatccacacatttgcaaaccaaatcaaatgca 12716021  T
Q  431 taagtgagcatcttaattttccgtaacctgaagaagtgccaaactgatgaaaatgatccacaatgttacccggatccgc 509  Q
     ||| | ||||||| |||| ||  ||| | |||||||| ||||||||| ||||||||  ||||| ||||  ||||||||    
T  12716020 aaagagggcatcttgatttgccaaaacgtaaagaagtgtcaaactgataaaaatgattgacaatattacaaggatccgc 12715942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 422
Target Start/End: Complemental strand, 5634826 - 5634773
Alignment:
Q  369 aaaaatcctgtcattcctttctttccatatctcccatacagttgcaaaccaaat 422  Q
    ||||||||||| ||| ||||||||||| |  ||||| |||||||||||||||||    
T  5634826 aaaaatcctgttatttctttctttccacaattcccacacagttgcaaaccaaat 5634773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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