View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8810A_low_100 (Length: 316)
Name: NF8810A_low_100
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_100 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 302
Target Start/End: Original strand, 5172848 - 5173130
Alignment:
| Q |
20 |
aaattttccatccttcattagcaatctcacatccctgactttcttatccttctatggaaattacatgcaaggatcattttcattgaccaccttggctaat |
119 |
Q |
| |
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||||||||||||||||||||| |||||||||||| |||| |||||||| |||||| ||||||||||||||||||||||||| | | || ||||||||| |
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| T |
5172848 |
aaattttccatccttcattagtaatctcacatccttgacattcttatcactctatgaaaattacatgcaaggatcattttcacttatcattttggctaat |
5172947 |
T |
|
| Q |
120 |
cactccaatcttcaacatctatatatttcaccgaacaatagtaccggagtacacattgaaactgaaaaaacaaaatggtttcctaaatttcaattgaagt |
219 |
Q |
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|
|||||||||||||| |||||| |||||||| |||| || || || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5172948 |
cactccaatcttcagcatctacatatttcatcgaaaaacagcactggagtacacattgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagt |
5173047 |
T |
|
| Q |
220 |
cactcattcttagaaattgcaacctaaacaaagacaaaggaagtgtcattcctacttttctttcttatcaatataatttgata |
302 |
Q |
| |
|
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5173048 |
ccctcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattcctacttttctttcttatcaatataatttgata |
5173130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 24 - 301
Target Start/End: Original strand, 5159936 - 5160213
Alignment:
| Q |
24 |
tttccatccttcattagcaatctcacatccctgactttcttatccttctatggaaattacatgcaaggatcattttcattgaccaccttggctaatcact |
123 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||| | | |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| | |
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| T |
5159936 |
tttccatctttcattagcaatctcacatcactggcatacttatccttctatggaaattacatgcaaggatcattttcattgagcactttggctaatcatt |
5160035 |
T |
|
| Q |
124 |
ccaatcttcaacatctatatatttcaccgaacaatagtaccggagtacacattgaaactgaaaaaacaaaatggtttcctaaatttcaattgaagtcact |
223 |
Q |
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|||||||| | ||||||||||||| | || || | || |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5160036 |
ccaatcttgaggttctatatatttcatcaaaaaacaatattggagtagacattgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtcact |
5160135 |
T |
|
| Q |
224 |
cattcttagaaattgcaacctaaacaaagacaaaggaagtgtcattcctacttttctttcttatcaatataatttgat |
301 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5160136 |
cattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattcctacttttctttcttatcaatacaatttgat |
5160213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 20 - 307
Target Start/End: Original strand, 5182180 - 5182464
Alignment:
| Q |
20 |
aaattttccatccttcattagcaatctcacatccctgactttcttatccttctatggaaattacatgcaaggatcattttcattgaccaccttggctaat |
119 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||| | | |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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|
| T |
5182180 |
aaattttccatctttcattagcaatctcacatcactggcatacttatccttctatggaaattacatgcaaggatcattttcattgagcactttggctaat |
5182279 |
T |
|
| Q |
120 |
cactccaatcttcaacatctatatatttcaccgaacaatagtaccggagtacacattgaaactgaaaaaacaaaatggtttcctaaatttcaattgaagt |
219 |
Q |
| |
|
||||| |||||||| |||||||||||||||||| | || ||| ||||| | ||||||||||||||| ||||| |||||||| ||||||||||||||| |
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|
| T |
5182280 |
cactcaaatcttcagcatctatatatttcaccggaaaacagt---ggagttctcattgaaactgaaaagacaaagtggtttcccaaatttcaattgaaga |
5182376 |
T |
|
| Q |
220 |
cactcattcttagaaattgcaacctaaacaaagacaaaggaagtgtcattcctacttttctttcttatcaatataatttgatattctt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5182377 |
cactcattcttagaaattgcaacctaaacaaggagaaaggaggtgtcattcctacttttctttcatatcaatataatttgatattctt |
5182464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 20 - 302
Target Start/End: Complemental strand, 4842677 - 4842395
Alignment:
| Q |
20 |
aaattttccatccttcattagcaatctcacatccctgactttcttatccttctatggaaattacatgcaaggatcattttcattgaccaccttggctaat |
119 |
Q |
| |
|
||||||||||||||||| || ||||||||||||| |||| |||||||| |||||| ||||||||||||||||||||||||| | | || ||||||||| |
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|
| T |
4842677 |
aaattttccatccttcactaccaatctcacatccttgacattcttatcactctatgaaaattacatgcaaggatcattttcacttatcaatttggctaat |
4842578 |
T |
|
| Q |
120 |
cactccaatcttcaacatctatatatttcaccgaacaatagtaccggagtacacattgaaactgaaaaaacaaaatggtttcctaaatttcaattgaagt |
219 |
Q |
| |
|
|||||||||||||| ||||||||||||||| | || || |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
4842577 |
cactccaatcttcagcatctatatatttcatctaaaaacagtattggagtacacattgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagt |
4842478 |
T |
|
| Q |
220 |
cactcattcttagaaattgcaacctaaacaaagacaaaggaagtgtcattcctacttttctttcttatcaatataatttgata |
302 |
Q |
| |
|
| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4842477 |
ccctcattcttagaaattgcaacctaaacatgaagaaaggaagtgtcattcctacttttctttcttatcaatataatttgata |
4842395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 20 - 299
Target Start/End: Original strand, 5195574 - 5195853
Alignment:
| Q |
20 |
aaattttccatccttcattagcaatctcacatccctgactttcttatccttctatggaaattacatgcaaggatcattttcattgaccaccttggctaat |
119 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||| | | |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
5195574 |
aaattttccatctttcattagcaatctcacatcactggcatacttatccttctatggaaattacatgcaaggatcattttcattgagcactttggctaat |
5195673 |
T |
|
| Q |
120 |
cactccaatcttcaacatctatatatttcaccgaacaatagtaccggagtacacattgaaactgaaaaaacaaaatggtttcctaaatttcaattgaagt |
219 |
Q |
| |
|
|| ||||||||| | ||||||||||||| | || || | || |||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
5195674 |
cattccaatcttgaggttctatatatttcatcaaaaaacaatattggagtagacattgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagt |
5195773 |
T |
|
| Q |
220 |
cactcattcttagaaattgcaacctaaacaaagacaaaggaagtgtcattcctacttttctttcttatcaatataatttg |
299 |
Q |
| |
|
|||| ||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
5195774 |
cacttattgttagaaattgcaacctaaacaaggacgaaggaagtgtcattcctacttttctttcatatcaatataatttg |
5195853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 20 - 307
Target Start/End: Complemental strand, 4857150 - 4856867
Alignment:
| Q |
20 |
aaattttccatccttcattagcaatctcacatccctgactttcttatccttctatggaaattacatgcaaggatcattttcattgaccaccttggctaat |
119 |
Q |
| |
|
||||||||||||||||| || |||||||||||| || | | || |||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
4857150 |
aaattttccatccttcactaccaatctcacatctcttgcatact-atccatctatggaaattacatgcaaggatcattttcattgaccactttggctaat |
4857052 |
T |
|
| Q |
120 |
cactccaatcttcaacatctatatatttcaccgaacaatagtaccggagtacacattgaaactgaaaaaacaaaatggtttcctaaatttcaattgaagt |
219 |
Q |
| |
|
||||| |||||||| |||||||||||||||||| | || ||| ||||| | ||||||||||||||| ||||| |||||||| ||||||||||||||| |
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|
| T |
4857051 |
cactcaaatcttcagcatctatatatttcaccggaaaacagt---ggagttctcattgaaactgaaaagacaaagtggtttcccaaatttcaattgaaga |
4856955 |
T |
|
| Q |
220 |
cactcattcttagaaattgcaacctaaacaaagacaaaggaagtgtcattcctacttttctttcttatcaatataatttgatattctt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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|
| T |
4856954 |
cactcattcttagaaattgcaacctaaacatggacgaaggaagtgtcattcctacttttctttcatatcaatataatttggtattctt |
4856867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 20 - 304
Target Start/End: Original strand, 5213740 - 5214021
Alignment:
| Q |
20 |
aaattttccatccttcattagcaatctcacatccctgactttcttatccttctatggaaattacatgcaaggatcattttcattgaccaccttggctaat |
119 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||| | | ||||||| ||| |||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
5213740 |
aaattttccatccttcattagtaatctcacatcactggcatacttatccctctttggaaattacatgcaaggatcattttcattgagcactttggctaat |
5213839 |
T |
|
| Q |
120 |
cactccaatcttcaacatctatatatttcaccgaacaatagtaccggagtacacattgaaactgaaaaaacaaaatggtttcctaaatttcaattgaagt |
219 |
Q |
| |
|
||||||||||| || ||||||||||||||| | |||| || | || | | |||||||||||||||| ||||| ||||| || ||||||||||||||| |
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|
| T |
5213840 |
cactccaatctccagcatctatatatttcatc--acaa-agcattggtgcaaacattgaaactgaaaagacaaagtggttacccaaatttcaattgaaga |
5213936 |
T |
|
| Q |
220 |
cactcattcttagaaattgcaacctaaacaaagacaaaggaagtgtcattcctacttttctttcttatcaatataatttgatatt |
304 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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|
| T |
5213937 |
cactcattcttagaaattgcaacttaaacaaggacaaaggaagtgtcattcctacttttctttcatatcaatatagtttgatatt |
5214021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 165 - 299
Target Start/End: Original strand, 7142257 - 7142390
Alignment:
| Q |
165 |
ggagtacacattgaaactgaaaaaacaaaatggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaagacaaaggaagtg |
264 |
Q |
| |
|
||||||||| ||||||||||||| ||||| |||||||||| ||||||| | | |||| || ||| ||||||||||| ||||| |||||||||| || |
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|
| T |
7142257 |
ggagtacacgttgaaactgaaaatacaaagtggtttcctagatttcaactacatacacttatg-ttaaaaattgcaaccaaaacatggacaaaggaaatg |
7142355 |
T |
|
| Q |
265 |
tcattcctacttttctttcttatcaatataatttg |
299 |
Q |
| |
|
||||||||| |||| |||| |||||| |||||||| |
|
|
| T |
7142356 |
tcattcctagttttttttcatatcaacataatttg |
7142390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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