View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8810A_low_102 (Length: 311)

Name: NF8810A_low_102
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8810A_low_102
NF8810A_low_102
[»] chr7 (2 HSPs)
chr7 (134-279)||(28518944-28519089)
chr7 (6-48)||(28518816-28518858)
[»] chr8 (2 HSPs)
chr8 (146-236)||(12728863-12728953)
chr8 (146-238)||(34291144-34291236)


Alignment Details
Target: chr7 (Bit Score: 146; Significance: 6e-77; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 134 - 279
Target Start/End: Original strand, 28518944 - 28519089
Alignment:
Q  134 acttagttatcatgaagccaaagagtccattgtatatagctacacaaagagcttcaatgcatttgctgcaaaactgtcagaagatgaagtcaataagtta 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28518944 acttagttatcatgaagccaaagagtccattgtatatagctacacaaagagcttcaatgcatttgctgcaaaactgtcagaagatgaagtcaataagtta 28519043  T
Q  234 tctggtgtgtataattttttctctagcttaaaatttgtagatattg 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  28519044 tctggtgtgtataattttttctctagcttaaaatttgtagatattg 28519089  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 48
Target Start/End: Original strand, 28518816 - 28518858
Alignment:
Q  6 atcttctgtgaagggaaggtaaccttattaattcaatcaagca 48  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  28518816 atcttctgtgaagggaaggtaaccttattaattcaatcaagca 28518858  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 146 - 236
Target Start/End: Complemental strand, 12728953 - 12728863
Alignment:
Q  146 tgaagccaaagagtccattgtatatagctacacaaagagcttcaatgcatttgctgcaaaactgtcagaagatgaagtcaataagttatct 236  Q
    |||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||| || || ||||||| ||| |||||||||    
T  12728953 tgaagccaaagagtccatagtatacagctacacaaagagctttaatgcatttgctgctaaactatccgaggatgaagccaacaagttatct 12728863  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 34291144 - 34291236
Alignment:
Q  146 tgaagccaaagagtccattgtatatagctacacaaagagcttcaatgcatttgctgcaaaactgtcagaagatgaagtcaataagttatctgg 238  Q
    |||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||| |||||||| || |||||||  || |||||||||||    
T  34291144 tgaagccaaagaatccatagtatacagctacacaaagagctttaatgcatttgctgctaaactgtctgaggatgaagcaaacaagttatctgg 34291236  T

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