View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8810A_low_105 (Length: 305)

Name: NF8810A_low_105
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8810A_low_105
NF8810A_low_105
[»] chr2 (1 HSPs)
chr2 (14-305)||(7948043-7948334)


Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 14 - 305
Target Start/End: Original strand, 7948043 - 7948334
Alignment:
Q  14 atggacatcatactttacactttttgacaccatgtttgtannnnnnnaagaaactattaaacatagaatgtttatcttattgacaataacatatttagag 113  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7948043 atggacatcatactttacactttttgacaccatgtttgtatttttttaagaaactattaaacatagaatgtttatcttattgacaataacatatttagag 7948142  T
Q  114 acattaacatcacaaaacatgtgtagctagctatgaatgaaatgtgataggcactgcctaatcaaaagtttcttatgcatacaccagtaagtgttaacta 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7948143 acattaacatcacaaaacatgtgtagctagctatgaatgaaatgtgataggcactgcctaatcaaaagtttcttatgcatacaccagtaagtgttaacta 7948242  T
Q  214 cgattaatttttgagaaactttaactggaaattcctctttaaattaaacaattattacttttctatactttaaaatgcaaattttaaatttc 305  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7948243 cgattaattttttagaaactttaactggaaattcctctttaaattaaacaattattacttttctatactttaaaatgcaaattttaaatttc 7948334  T

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