View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_107 (Length: 302)
Name: NF8810A_low_107
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_107 |
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Alignment Details
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 10368474 - 10368546
Alignment:
| Q |
102 |
ctttcaattcaacggattgattgatttaatatgtcatctacaaagagcctatataaatgtcaccaaacttgtg |
174 |
Q |
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| T |
10368474 |
ctttcaattcaacggattgattgatttaatatgtcatctacaaagagcctatataaatgtcaccaaacttgtg |
10368546 |
T |
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Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 236 - 290
Target Start/End: Original strand, 10368608 - 10368662
Alignment:
| Q |
236 |
agaaaacaaatctgaatctttgaactccattcttcttcttctccttcatatcagt |
290 |
Q |
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| T |
10368608 |
agaaaacaaatctgaatctttgaactccattcttcttcttctccttcatctcagt |
10368662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 284
Target Start/End: Complemental strand, 36116814 - 36116775
Alignment:
| Q |
245 |
atctgaatctttgaactccattcttcttcttctccttcat |
284 |
Q |
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| T |
36116814 |
atctgaatctttgaactccattattcttcttctccttcat |
36116775 |
T |
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