View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_109 (Length: 302)
Name: NF8810A_low_109
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_109 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 30315749 - 30316014
Alignment:
| Q |
1 |
agagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaattttgggagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
30315749 |
agagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagacaaagggagcctatttcttcaattttgggagc |
30315848 |
T |
|
| Q |
101 |
tttttaatgagtgatcaaatattatgcatgtatgctgtaaggaactatagctcatagtgagcaaagaataaaacgtcattatcttgtaactataactaga |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||| |
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| T |
30315849 |
tttttaatgagtgatcaaatgttatgcatgtatgctgtaaggaactatagctcatagtgagcaaagaataaaacggcattatcttgtaattgtaactaga |
30315948 |
T |
|
| Q |
201 |
gttccaccttttgtactatgaataaattaatcaagaataagttttgtgccacctctcttgctacta |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30315949 |
gttccaccttttgtactatgaataaattaatcaagaataagttttgtgccacctctcttactacta |
30316014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 30304883 - 30305147
Alignment:
| Q |
1 |
agagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaattttgggagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
30304883 |
agagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagacaaagggagcctatttcttcaattttgggagc |
30304982 |
T |
|
| Q |
101 |
tttttaatgagtgatcaaatattatgcatgtatgctgtaaggaactatagctcatagtgagcaaagaataaaacgtcattatcttgtaactataactaga |
200 |
Q |
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|||||||||||||||||||||||||||| ||||| | || ||| |||||||| ||| ||||| | |||||||||| |||||||||||||||||||||||| |
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| T |
30304983 |
tttttaatgagtgatcaaatattatgcaagtatgatatatggagctatagctaataatgagcgatgaataaaacggcattatcttgtaactataactaga |
30305082 |
T |
|
| Q |
201 |
gttccaccttttgtactatgaataaattaatcaagaataagttttgtgccacctctcttgctacta |
266 |
Q |
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|||||||| ||| |||||||||||| | |||||||||||||||||| ||||||||||||||||||| |
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| T |
30305083 |
gttccacc-tttctactatgaataactgaatcaagaataagttttgagccacctctcttgctacta |
30305147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 30287215 - 30287462
Alignment:
| Q |
1 |
agagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaattttgggagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
30287215 |
agagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagacaaagggagcctatttcttcaattttgggagc |
30287314 |
T |
|
| Q |
101 |
tttttaatgagtgatcaaatattatgcatgtatgctgtaaggaactatagctcatagtgagcaaagaataaaacgtcattatcttgtaactataactaga |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||| |||||||| |
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| T |
30287315 |
tttttaatgagtgatcaaatgttatgcatgtatgctgtaaggaactatagctcataatgagaaaagaataaaacggcattatcttg------taactaga |
30287408 |
T |
|
| Q |
201 |
gttccaccttttgtactatgaataaattaatcaagaataagttttgtgccacctc |
255 |
Q |
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||||| || ||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30287409 |
gttcctcc-tttctactatgaataaattaatcaagaataagttttgtgcctcctc |
30287462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 30300091 - 30300349
Alignment:
| Q |
1 |
agagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaattttgggagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||| |
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| T |
30300091 |
agagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagacaaagggagcttatatcttcaattttgggagt |
30300190 |
T |
|
| Q |
101 |
tttttaatgagtgatcaaatattatgcatgtatgctgtaaggaactatagctcatagtgagcaaagaataaaacgtcattatcttgtaactataactaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||| || ||||||| || ||||| |
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| T |
30300191 |
attttaatgagtgatcaaatattatgcttgtatgctgtaaggagtcatagctcatagtgagcagagaataaaacggcaatatcttg------tatctaga |
30300284 |
T |
|
| Q |
201 |
gttccaccttttgtactatgaataaattaatcaagaataagttttgtgccacctctcttgctacta |
266 |
Q |
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|||||||| ||| || |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30300285 |
gttccacc-tttccaccatgaataaattaatcaagaataagttttgtgccacctctcttactacta |
30300349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 30292249 - 30292485
Alignment:
| Q |
1 |
agagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaattttgggagc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
30292249 |
agagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcgggaac |
30292348 |
T |
|
| Q |
101 |
tttttaatgagtgatcaaatattatgcatgtatgctgtaaggaactatagctcatagtgagcaaagaataaaacgtcattatcttgtaactataactaga |
200 |
Q |
| |
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|||||||| |||||||| |||||||| || |||||||||||||||| |||||||||| ||||| |||||||||||||||||| |
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| T |
30292349 |
gttttaatg--------cttattatgcttgtatgctcta---------agctcatagtgagcaatgaataaaacggcattagcttgtaactataactaga |
30292431 |
T |
|
| Q |
201 |
gttccaccttttgtactatgaataaattaatcaagaataagttttgtgccacctc |
255 |
Q |
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|||||| |||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30292432 |
gttcca-ctttcctactatgaataaattaatcaagaacaagttttgtgccacctc |
30292485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 46810542 - 46810582
Alignment:
| Q |
3 |
agacaatcttactttgcaaatgctcagcctcaacaaaggga |
43 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||| |
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| T |
46810542 |
agacaatcttactttgcaaatgctcaacctcaacaaaggga |
46810582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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