View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_11 (Length: 516)
Name: NF8810A_low_11
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_11 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 74 - 516
Target Start/End: Original strand, 1045396 - 1045813
Alignment:
| Q |
74 |
actctataaaattgttacattatttacaatcaataaaatattaattttaccatcaaaatctaactaaaaaacttatttcacaagaaaaatcatattttta |
173 |
Q |
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| T |
1045396 |
actctataaaattgttacattatttacaatcaataaaatattaattttaccatcaaaatctaactaaaaaacttatttcacaagaaaaatcatattttta |
1045495 |
T |
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| Q |
174 |
gatcgatagtagtattcatcgtcttctcagtttcattttaggttctgcataagtgcatcatcgaagcttctacccttctcgaaaacaattcagttataac |
273 |
Q |
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| T |
1045496 |
gatcgatagtagtattcatcgtcttctcagtttcattttcggttat----------accatcgaagcttctacccatggcgaaaacaattcaattataac |
1045585 |
T |
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| Q |
274 |
gaaacaatctcactatacgttacgatcttttcttcactgtttgaatctattcgattaacaagtataataaataactcattgtaatcacgttttgtgctcc |
373 |
Q |
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| T |
1045586 |
gacaccctctcactataaggtacgatcttttcttcactgtttgaatctattcgattaacaagtataataaataactca-------------ttgtgctcc |
1045672 |
T |
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| Q |
374 |
taattttttcaatttatcttgttatttgttatttttggcaaacattctgtgtgtgtgactgaaatttttgttaaaatttaaagaaaatggaaaagtagtt |
473 |
Q |
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| T |
1045673 |
taattttttcaatttatcttgttatctgttatttttggcaaacattc--tgtgtgtgactgaaatttttgttaaaatttaaagaaaatggaaaagtagtt |
1045770 |
T |
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| Q |
474 |
tgtttaaggagttgatatgacttgaattgtggctataacttat |
516 |
Q |
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| T |
1045771 |
tgtttaaggagttgatatgacttgaattgtggctataacttat |
1045813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 281 - 323
Target Start/End: Original strand, 1039303 - 1039345
Alignment:
| Q |
281 |
tctcactatacgttacgatcttttcttcactgtttgaatctat |
323 |
Q |
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| T |
1039303 |
tctcacgatacggtacgttcttttcttcactgtttgaatctat |
1039345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 76
Target Start/End: Original strand, 18569039 - 18569081
Alignment:
| Q |
34 |
ttaatagaaccttcaccctagaatccacctatttaatttcact |
76 |
Q |
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| T |
18569039 |
ttaataggaccttcaccctagaatccacctatataattacact |
18569081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 24848438 - 24848475
Alignment:
| Q |
26 |
tgaggcacttaatagaaccttcaccctagaatccacct |
63 |
Q |
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| T |
24848438 |
tgagggacttaatagaaccctcaccctagaatccacct |
24848475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 24847819 - 24847783
Alignment:
| Q |
26 |
tgaggcacttaatagaaccttcaccctagaatccacc |
62 |
Q |
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| T |
24847819 |
tgagggacttaatagaaccctcaccctagaatccacc |
24847783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 4402299 - 4402335
Alignment:
| Q |
26 |
tgaggcacttaatagaaccttcaccctagaatccacc |
62 |
Q |
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| T |
4402299 |
tgagggacttaatagaaccctcaccctagaatccacc |
4402335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 4706968 - 4707004
Alignment:
| Q |
26 |
tgaggcacttaatagaaccttcaccctagaatccacc |
62 |
Q |
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| T |
4706968 |
tgagggacttaatagaaccctcaccctagaatccacc |
4707004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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