View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8810A_low_110 (Length: 300)

Name: NF8810A_low_110
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8810A_low_110
NF8810A_low_110
[»] chr8 (1 HSPs)
chr8 (9-300)||(42138675-42138966)


Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 9 - 300
Target Start/End: Original strand, 42138675 - 42138966
Alignment:
Q  9 aatgaaatgttaaaaaaccatgttaaacttcaacatacttatttctacaaggtaaagacttaggcagcgaagctagcagcagtgatgcctttgctctttc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42138675 aatgaaatgttaaaaaaccatgttaaacttcaacatacttatttctacaaggtaaagacttaggcagcgaagctagcagcagtgatgcctttgctctttc 42138774  T
Q  109 aagattagtctgtttgtgagaccttatatgctctggaattctttttgtgcctatcttctgaagtccatagaaccgtcccttgtgcagattctgtatcatt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42138775 aagattagtctgtttgtgagaccttatatgctctggaattctttttgtgcctatcttctgaagtccaaagaaccgtcccttgtgcagattctgtatcatt 42138874  T
Q  209 tacacaacaaaaatttcataggaactcataaacacacaaaataatacaaattaatacaagtgaacaataatgttcatactgcagctaactga 300  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42138875 tacacaacaaaaatttcataggaactcataaacacaaaaaataatacaaattaatacaagtgaacaataatgttcatactgcagctaactga 42138966  T

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