View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8810A_low_113 (Length: 299)
Name: NF8810A_low_113
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_113 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 21 - 299
Target Start/End: Complemental strand, 9329649 - 9329368
Alignment:
| Q |
21 |
tcagaggtggttgttccaaaggtattaagagaagttatgtttcaactttcatgtcttagactaagtgatgcagctagattaactgagaaatcagaaattg |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9329649 |
tcagaggtggttgttccaaaggtattaagagaagttatgtttcaactttcatgtcttagactaagtgatgcagctagattaactgagaaatcagaaattg |
9329550 |
T |
|
| Q |
121 |
aagttttataatccgtgttggagtccataatactactagccttctatgaatcaagcaaaca---ttttatccagacaacatgtttagcaatgaactcata |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
9329549 |
aagttttataatccgtgttggagtccataatactactagccttctatgaatcaagcaaacatttttttatccagacaacatgtttagcattgaactcata |
9329450 |
T |
|
| Q |
218 |
attcttaattacatattcaaatgaaaagatgctggaaaaagtggttgaatttggtttgttatgttatgttattttgatttga |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9329449 |
attcttaattacatattcaaatgaaaagatgctgggaaaagtggttgaatttggtttgttatgttatgttattttgatttga |
9329368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 187 - 299
Target Start/End: Complemental strand, 9335286 - 9335174
Alignment:
| Q |
187 |
tccagacaacatgtttagcaatgaactcataattcttaattacatattcaaatgaaaagatgctggaaaaagtggttgaatttggtttgttatgttatgt |
286 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9335286 |
tccagacaacatgtttagcaatgaatttctaattcttaattacatattcagatgaaaagatgctggaaaaagtggttgaatttggtttgttatgttatgt |
9335187 |
T |
|
| Q |
287 |
tattttgatttga |
299 |
Q |
| |
|
||||||||||||| |
|
|
| T |
9335186 |
tattttgatttga |
9335174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 190
Target Start/End: Complemental strand, 9336184 - 9336120
Alignment:
| Q |
123 |
gttttataatccgtgttggagtccataatactactagccttctatgaatcaagcaaacattttatcca |
190 |
Q |
| |
|
|||| ||| ||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9336184 |
gtttgatactccgtgttgtagtccataatgcta---gccttctatgaatcaagcaaacattttatcca |
9336120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 231111 - 231059
Alignment:
| Q |
223 |
taattacatattcaaatgaaaagatgctggaaaaagtggttgaatttggtttg |
275 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||| | ||| |||||||||||| |
|
|
| T |
231111 |
taattacacattcatatgaaaagatgctggaaaacgaggtggaatttggtttg |
231059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 269
Target Start/End: Original strand, 252067 - 252113
Alignment:
| Q |
223 |
taattacatattcaaatgaaaagatgctggaaaaagtggttgaattt |
269 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| | ||| |||||| |
|
|
| T |
252067 |
taattacatattcatatgaaaagatgctggaaaatgaggtggaattt |
252113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 8814852 - 8814898
Alignment:
| Q |
210 |
aactcataattcttaattacatattcaaatgaaaagatgctggaaaa |
256 |
Q |
| |
|
||||| ||| || |||||||||||||| ||||||||||||||||||| |
|
|
| T |
8814852 |
aactcttaagtcctaattacatattcatatgaaaagatgctggaaaa |
8814898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University