View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8810A_low_117 (Length: 297)

Name: NF8810A_low_117
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8810A_low_117
NF8810A_low_117
[»] chr2 (7 HSPs)
chr2 (7-115)||(37642282-37642388)
chr2 (118-219)||(32291155-32291256)
chr2 (118-229)||(8985574-8985685)
chr2 (118-229)||(8986927-8987038)
chr2 (118-220)||(38583500-38583602)
chr2 (131-190)||(32276952-32277011)
chr2 (161-220)||(38588207-38588266)
[»] chr3 (10 HSPs)
chr3 (118-222)||(46691456-46691559)
chr3 (118-222)||(42531289-42531393)
chr3 (118-222)||(50297460-50297564)
chr3 (118-241)||(814375-814498)
chr3 (124-229)||(30057091-30057196)
chr3 (118-210)||(814260-814351)
chr3 (119-231)||(16462968-16463079)
chr3 (118-222)||(42530590-42530692)
chr3 (118-218)||(50294658-50294756)
chr3 (124-218)||(18088145-18088238)
[»] chr7 (12 HSPs)
chr7 (118-229)||(15614250-15614361)
chr7 (118-222)||(2628250-2628354)
chr7 (118-229)||(46963064-46963175)
chr7 (139-229)||(6840606-6840696)
chr7 (117-229)||(46964418-46964530)
chr7 (118-219)||(44339050-44339151)
chr7 (119-231)||(21814428-21814539)
chr7 (156-219)||(44337385-44337448)
chr7 (164-229)||(26403493-26403558)
chr7 (118-194)||(6841471-6841547)
chr7 (155-229)||(26402359-26402433)
chr7 (124-172)||(17921256-17921304)
[»] chr1 (8 HSPs)
chr1 (118-214)||(15630161-15630257)
chr1 (118-229)||(15629347-15629458)
chr1 (118-229)||(6696015-6696126)
chr1 (155-229)||(28665017-28665090)
chr1 (118-232)||(2073362-2073479)
chr1 (118-232)||(2076894-2077011)
chr1 (191-232)||(2070734-2070775)
chr1 (118-197)||(2071561-2071641)
[»] chr4 (9 HSPs)
chr4 (118-229)||(16871651-16871762)
chr4 (115-222)||(16543357-16543464)
chr4 (155-222)||(37945521-37945588)
chr4 (125-213)||(16869513-16869601)
chr4 (167-222)||(24131825-24131880)
chr4 (155-229)||(54146651-54146724)
chr4 (191-242)||(24226122-24226171)
chr4 (166-218)||(52849357-52849409)
chr4 (156-208)||(54148313-54148364)
[»] chr6 (13 HSPs)
chr6 (156-229)||(22868499-22868572)
chr6 (155-223)||(9290660-9290728)
chr6 (119-221)||(33423985-33424087)
chr6 (118-219)||(18984497-18984598)
chr6 (118-202)||(21862689-21862773)
chr6 (118-218)||(10741772-10741871)
chr6 (158-222)||(18792850-18792914)
chr6 (117-218)||(10740573-10740671)
chr6 (121-172)||(236581-236632)
chr6 (117-222)||(13166434-13166538)
chr6 (170-229)||(28064663-28064723)
chr6 (170-229)||(28063008-28063066)
chr6 (180-222)||(9365114-9365155)
[»] chr5 (6 HSPs)
chr5 (118-218)||(11320486-11320585)
chr5 (126-222)||(24137606-24137702)
chr5 (124-229)||(11343924-11344028)
chr5 (157-228)||(6643402-6643473)
chr5 (159-232)||(9512489-9512562)
chr5 (156-220)||(17749736-17749800)
[»] chr8 (11 HSPs)
chr8 (118-219)||(20242727-20242828)
chr8 (118-219)||(20250332-20250433)
chr8 (156-219)||(20241063-20241126)
chr8 (156-219)||(20251941-20252004)
chr8 (118-218)||(43414101-43414199)
chr8 (118-205)||(43615458-43615545)
chr8 (124-222)||(33199415-33199514)
chr8 (158-221)||(44374651-44374714)
chr8 (170-261)||(43516178-43516262)
chr8 (155-220)||(16578791-16578856)
chr8 (124-222)||(20093307-20093403)
[»] scaffold0002 (1 HSPs)
scaffold0002 (118-218)||(406256-406356)
[»] scaffold0511 (1 HSPs)
scaffold0511 (158-222)||(11227-11291)
[»] scaffold0325 (1 HSPs)
scaffold0325 (118-229)||(14526-14638)
[»] scaffold0007 (1 HSPs)
scaffold0007 (118-192)||(14290-14364)


Alignment Details
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 7 - 115
Target Start/End: Complemental strand, 37642388 - 37642282
Alignment:
Q  7 aattcatctaaaagactagtattgtttgatgaagaaaactcaatacaagtctctggtaaagggatatctatggaatggtttgtaaacccattaaaatgta 106  Q
    |||||| ||||||||||||| ||||  ||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||    
T  37642388 aattcacctaaaagactagtgttgt--gatgaagaaaactcaatacaagtctcttgtgaagggatatccatggaatggtttgtaaacccattaaaatgta 37642291  T
Q  107 tgggtaggt 115  Q
    |||||||||    
T  37642290 tgggtaggt 37642282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 118 - 219
Target Start/End: Original strand, 32291155 - 32291256
Alignment:
Q  118 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaa 217  Q
    ||||| ||||||||||||||| ||||||||| ||  ||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||    
T  32291155 tgttagataataaagtattgagcttaagttattgtgtctttatattagtaagttagagtccattaagatttattatatattctcttataaccttttgtaa 32291254  T
Q  218 tg 219  Q
    ||    
T  32291255 tg 32291256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 118 - 229
Target Start/End: Original strand, 8985574 - 8985685
Alignment:
Q  118 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaa 217  Q
    ||||| |||||||||||||   ||||||||| ||||  ||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||    
T  8985574 tgttagataataaagtattaggcttaagttattggacatttatattagtaagttaaagtccattagattttattatatattctcttataaccttttgtaa 8985673  T
Q  218 tgttaggctatt 229  Q
    ||||| ||||||    
T  8985674 tgttaagctatt 8985685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 118 - 229
Target Start/End: Original strand, 8986927 - 8987038
Alignment:
Q  118 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaa 217  Q
    ||||| |||||||||||||   ||||||||| |||   ||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||    
T  8986927 tgttagataataaagtattaggcttaagttattgggcatttatattagtaagttagagtccattaaattttattatatattctcttataaccttttgtaa 8987026  T
Q  218 tgttaggctatt 229  Q
    ||||| ||||||    
T  8987027 tgttaagctatt 8987038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 118 - 220
Target Start/End: Complemental strand, 38583602 - 38583500
Alignment:
Q  118 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaa 217  Q
    ||||| |||||||| ||||   ||||| ||| |||  ||||||||||||||||||||  ||||||| ||||||||||||||| |||||||||||||||||    
T  38583602 tgttagataataaaatattaggcttaaattattgggcctttatattagtaagttagaacccgttagattttattatatattcgcttataaccttttgtaa 38583503  T
Q  218 tgt 220  Q
    |||    
T  38583502 tgt 38583500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 32276952 - 32277011
Alignment:
Q  131 agtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttttat 190  Q
    |||||||| ||||||||| |||| |||||||||||||||||||||||| |||||||||||    
T  32276952 agtattgagcttaagttattggacctttatattagtaagttagagtccattaggttttat 32277011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 38588266 - 38588207
Alignment:
Q  161 attagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaatgt 220  Q
    |||| |||||||||||  |||||||||||||||||||| |||||||||||||||||||||    
T  38588266 attaataagttagagtaggttaggttttattatatattttcttataaccttttgtaatgt 38588207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 9e-36; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 118 - 222
Target Start/End: Complemental strand, 46691559 - 46691456
Alignment:
Q  118 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaa 217  Q
    ||||| ||||||||||||||||||||||||| |||| ||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  46691559 tgttagataataaagtattgaacttaagttattggacctttatactagtaagttagagtccatta-gttttattatatattctcttataaccttttgtaa 46691461  T
Q  218 tgtta 222  Q
    |||||    
T  46691460 tgtta 46691456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 118 - 222
Target Start/End: Original strand, 42531289 - 42531393
Alignment:
Q  118 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaa 217  Q
    ||||| ||||||||| ||||  ||| ||||| ||||  ||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||    
T  42531289 tgttagataataaaggattgggcttgagttattggacttttatattagtaagttaaagttcattaggttttattatatattctcttataaccttttgtaa 42531388  T
Q  218 tgtta 222  Q
    |||||    
T  42531389 tgtta 42531393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 118 - 222
Target Start/End: Original strand, 50297460 - 50297564
Alignment:
Q  118 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaa 217  Q
    ||||| ||||||||||||||  ||||||||| ||  ||||||||||||||||||||||| | ||| |||||||||||| ||| |||||||||||||||||    
T  50297460 tgttagataataaagtattgtgcttaagttattgagtctttatattagtaagttagagttcattatgttttattatatgttcacttataaccttttgtaa 50297559  T
Q  218 tgtta 222  Q
    |||||    
T  50297560 tgtta 50297564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 118 - 241
Target Start/End: Complemental strand, 814498 - 814375
Alignment:
Q  118 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttt--tattatatattctcttataaccttttgt 215  Q
    ||||| |||||||||||||| |||||||||| |||   ||||||||||||||||||||||| ||||||||  |  |||||||||||||||||||| ||||    
T  814498 tgttagataataaagtattggacttaagttattgggcatttatattagtaagttagagtccattaggtttcgttatatatattctcttataacctcttgt 814399  T
Q  216 aatgttaggctattttggtattctat 241  Q
    ||||||| ||||  ||||||||||||    
T  814398 aatgttaagcta--ttggtattctat 814375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 124 - 229
Target Start/End: Original strand, 30057091 - 30057196
Alignment:
Q  124 ataataaagtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaatgttag 223  Q
    ||||||||||||| |||| |||||| |||   ||||||||  ||||||||||||| |||| |||| |||||||||||||||||| ||||||||||||||     
T  30057091 ataataaagtattaaactcaagttattgggcatttatattcataagttagagtccattagattttgttatatattctcttataatcttttgtaatgttaa 30057190  T
Q  224 gctatt 229  Q
    ||||||    
T  30057191 gctatt 30057196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 118 - 210
Target Start/End: Original strand, 814260 - 814351
Alignment:
Q  118 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttttattatatattctcttataacct 210  Q
    ||||| |||||||||||||| |||||||||| |||   ||||||||||||||||||||||| ||||||||  || ||||||||||||||||||    
T  814260 tgttagataataaagtattggacttaagttattgggcatttatattagtaagttagagtccattaggtttcgtt-tatattctcttataacct 814351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 119 - 231
Target Start/End: Original strand, 16462968 - 16463079
Alignment:
Q  119 gttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaat 218  Q
    |||| ||||||||||||||| |||||| || |    |||||||||||||||||||||||| ||||| ||||||||||||||||| |||  ||||||||||    
T  16462968 gttagataataaagtattgagcttaagatattaagcctttatattagtaagttagagtccattagg-tttattatatattctctaatattcttttgtaat 16463066  T
Q  219 gttaggctatttt 231  Q
    ||||  |||||||    
T  16463067 gttaatctatttt 16463079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 118 - 222
Target Start/End: Original strand, 42530590 - 42530692
Alignment:
Q  118 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaa 217  Q
    ||||| |||||||||||||| |||| ||||| ||  | ||||||||||||| ||| ||| | |||||||||||||||||||||||||||||| |||||||    
T  42530590 tgttagataataaagtattggacttgagttagtgact-tttatattagtaaattaaagttcattaggttttattatatattctcttataacc-tttgtaa 42530687  T
Q  218 tgtta 222  Q
    |||||    
T  42530688 tgtta 42530692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 118 - 218
Target Start/End: Original strand, 50294658 - 50294756
Alignment:
Q  118 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaa 217  Q
    ||||| || |||||||||||  ||||||||| || | |||||||||| ||||||||||||| ||||||||||||||||||| ||||||||| ||||||||    
T  50294658 tgttagatgataaagtattgg-cttaagttattg-acctttatattaataagttagagtccattaggttttattatatattatcttataacattttgtaa 50294755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 124 - 218
Target Start/End: Complemental strand, 18088238 - 18088145
Alignment:
Q  124 ataataaagtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaat 218  Q
    ||||||||||||||  |||||| || | |  |||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||||||    
T  18088238 ataataaagtattgggcttaagctattaggcctttatattagtaagttagagtccattagg-tttattatatattctctcataacattttgtaat 18088145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 9e-33; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 118 - 229
Target Start/End: Complemental strand, 15614361 - 15614250
Alignment:
Q  118 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaa 217  Q
    ||||| ||||||||||||||  ||||||||| |||| ||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  15614361 tgttagataataaagtattgggcttaagttattggacctttatattagcaagttagagtccattaggttttattatatattcttttataaccttttgtaa 15614262  T
Q  218 tgttaggctatt 229  Q
    | ||| ||||||    
T  15614261 tattaagctatt 15614250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 118 - 222
Target Start/End: Complemental strand, 2628354 - 2628250
Alignment:
Q  118 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaa 217  Q
    ||||| ||||||||||||||| ||||||||| ||  ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||  ||||||||    
T  2628354 tgttagataataaagtattgagcttaagttattgagtctttatattagtaagttagagtccattaggttttattatatattctctcataattttttgtaa 2628255  T
Q  218 tgtta 222  Q
    |||||    
T  2628254 tgtta 2628250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 118 - 229
Target Start/End: Complemental strand, 46963175 - 46963064
Alignment:
Q  118 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaa 217  Q
    ||||| |||||||||||||   ||||||||| |||   ||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||    
T  46963175 tgttagataataaagtattaggcttaagttattgggcatttatattagtaagttagagtccattagattttattagatattctcttataaccttttgtaa 46963076  T
Q  218 tgttaggctatt 229  Q
    ||||| ||||||    
T  46963075 tgttaagctatt 46963064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 139 - 229
Target Start/End: Complemental strand, 6840696 - 6840606
Alignment:
Q  139 acttaagttactggatctttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaatgttaggctatt 229  Q
    |||||||||| |||  |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||    
T  6840696 acttaagttattgggcctttatatcagtaagttagagtccgttaggttttattatatattcttttataaccttttgtaatgtaaagctatt 6840606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 117 - 229
Target Start/End: Complemental strand, 46964530 - 46964418
Alignment:
Q  117 ctgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgta 216  Q
    |||||| ||||||||| |||   ||||||||| |||   |||||||||||| |||||||||| |||| |||||||||||||||||||||||| |||||||    
T  46964530 ctgttagataataaaggattaggcttaagttattgggcatttatattagtacgttagagtccattagattttattatatattctcttataactttttgta 46964431  T
Q  217 atgttaggctatt 229  Q
    || ||| ||||||    
T  46964430 atattaagctatt 46964418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 219
Target Start/End: Original strand, 44339050 - 44339151
Alignment:
Q  118 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaa 217  Q
    |||||||||||||| ||||| | |||||||| |||| |||||||||||||||||| ||||  |||  |||||||||||||||| ||||||| ||| ||||    
T  44339050 tgttaaataataaaatattggatttaagttattggacctttatattagtaagttaaagtcttttaaattttattatatattctgttataacatttagtaa 44339149  T
Q  218 tg 219  Q
    ||    
T  44339150 tg 44339151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 119 - 231
Target Start/End: Original strand, 21814428 - 21814539
Alignment:
Q  119 gttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaat 218  Q
    |||| ||||||||||||||| |||||| || |    |||||||||||||||||||||||| ||||| ||||||||||||||||| |||  ||||||||||    
T  21814428 gttagataataaagtattgagcttaagatattaagcctttatattagtaagttagagtccattagg-tttattatatattctctaatattcttttgtaat 21814526  T
Q  219 gttaggctatttt 231  Q
    ||||  |||||||    
T  21814527 gttaatctatttt 21814539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 44337385 - 44337448
Alignment:
Q  156 tttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaatg 219  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||    
T  44337385 tttatagtagtaagttagagtccgttagattttattatatattctcttataacatttagtaatg 44337448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 26403493 - 26403558
Alignment:
Q  164 agtaagttagagtccgttaggttttattatatattctcttataaccttttgtaatgttaggctatt 229  Q
    |||||||||||| |  |||| |||||||||||||||||||||||| ||||||||||||| ||||||    
T  26403493 agtaagttagagccgattagattttattatatattctcttataactttttgtaatgttatgctatt 26403558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 6841547 - 6841471
Alignment:
Q  118 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttttattata 194  Q
    ||||| |||||||| ||| | |||||||||| |||  |||||||| |||||||||||||||||||| ||||||||||    
T  6841547 tgttagataataaaatatcggacttaagttattgggcctttatatcagtaagttagagtccgttagattttattata 6841471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 26402359 - 26402433
Alignment:
Q  155 ctttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaatgttaggctatt 229  Q
    ||||||||||| ||||||||||   |||  |||||||||||||||| || |||| ||||||||||||| ||||||    
T  26402359 ctttatattagcaagttagagtttattaaattttattatatattcttttgtaactttttgtaatgttatgctatt 26402433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 17921304 - 17921256
Alignment:
Q  124 ataataaagtattgaacttaagttactggatctttatattagtaagtta 172  Q
    |||||||||||||  |||||||||| ||  |||||||||||||||||||    
T  17921304 ataataaagtattagacttaagttattgtgtctttatattagtaagtta 17921256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 118 - 214
Target Start/End: Complemental strand, 15630257 - 15630161
Alignment:
Q  118 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttg 214  Q
    ||||||||||||||||||||| ||||| ||| |||  |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  15630257 tgttaaataataaagtattgagcttaaattattgggcctttatattagtaagttagagtctattaggttttattatatattctcttataaccttttg 15630161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 118 - 229
Target Start/End: Complemental strand, 15629458 - 15629347
Alignment:
Q  118 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaa 217  Q
    ||||| |||||||| |||||  ||||||||| |||| |||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||    
T  15629458 tgttagataataaaatattgggcttaagttattggacctttatattagtaagttagagttcattagattttattatatattctcttataaccttttgtaa 15629359  T
Q  218 tgttaggctatt 229  Q
    | ||| ||||||    
T  15629358 tattaagctatt 15629347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 118 - 229
Target Start/End: Original strand, 6696015 - 6696126
Alignment:
Q  118 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaa 217  Q
    ||||| |||||||||||||   ||||||||| |||   ||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||    
T  6696015 tgttagataataaagtattaggcttaagttattgggcatttatattagtaagttagagtccattagattttattaaatattctcttataaccttttgtaa 6696114  T
Q  218 tgttaggctatt 229  Q
    ||||| ||||||    
T  6696115 tgttaagctatt 6696126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 28665017 - 28665090
Alignment:
Q  155 ctttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaatgttaggctatt 229  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||| ||| ||||||    
T  28665017 ctttatattagtaagttagagtccattagg-tttattatatattctctcataacattttgtaatattaagctatt 28665090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 232
Target Start/End: Complemental strand, 2073479 - 2073362
Alignment:
Q  118 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttag-agtccgttaggttttattatatat--tctcttataaccttttg 214  Q
    ||||| |||||||| |||||  |||||| || | |  ||| ||||||||||||||| ||||| |||||||||| |||||||  ||||||||||| |||||    
T  2073479 tgttagataataaaatattgggcttaagctattagtccttaatattagtaagttagcagtccattaggttttagtatatatattctcttataactttttg 2073380  T
Q  215 taatgttaggctattttg 232  Q
    ||||| || |||||||||    
T  2073379 taatgctatgctattttg 2073362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 232
Target Start/End: Complemental strand, 2077011 - 2076894
Alignment:
Q  118 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttag-agtccgttaggttttattatatat--tctcttataaccttttg 214  Q
    ||||| |||||||| |||||  |||||| || | |  ||| ||||||||||||||| ||||| |||||||||| |||||||  ||||||||||| |||||    
T  2077011 tgttagataataaaatattgggcttaagctattagtccttaatattagtaagttagcagtccattaggttttagtatatatattctcttataactttttg 2076912  T
Q  215 taatgttaggctattttg 232  Q
    ||||| || |||||||||    
T  2076911 taatgctatgctattttg 2076894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 232
Target Start/End: Complemental strand, 2070775 - 2070734
Alignment:
Q  191 tatatattctcttataaccttttgtaatgttaggctattttg 232  Q
    |||||||||||||||||| ||||||||||||| |||||||||    
T  2070775 tatatattctcttataactttttgtaatgttatgctattttg 2070734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 197
Target Start/End: Complemental strand, 2071641 - 2071561
Alignment:
Q  118 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttag-agtccgttaggttttattatatat 197  Q
    ||||| |||||||| |||||  |||||| || |||  ||| ||||||||||||||| ||||| |||||||||| |||||||    
T  2071641 tgttagataataaaatattgggcttaagctattgggccttaatattagtaagttagcagtccattaggttttagtatatat 2071561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 118 - 229
Target Start/End: Original strand, 16871651 - 16871762
Alignment:
Q  118 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaa 217  Q
    ||||| |||||||||||||   ||||||||| |||   ||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||    
T  16871651 tgttagataataaagtattaggcttaagttattgggcatttatattagtaagttagagtccattagattttattatatattatcttataaccttttgtaa 16871750  T
Q  218 tgttaggctatt 229  Q
    ||||| ||||||    
T  16871751 tgttaagctatt 16871762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 115 - 222
Target Start/End: Original strand, 16543357 - 16543464
Alignment:
Q  115 tactgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttg 214  Q
    |||||||| ||||||||||| || |||||||||| |||   ||||||||||||||||||||| | ||| |||||||||||||||||| | ||||||||||    
T  16543357 tactgttagataataaagtaatggacttaagttattggccttttatattagtaagttagagttcattaagttttattatatattctcatgtaaccttttg 16543456  T
Q  215 taatgtta 222  Q
     |||||||    
T  16543457 caatgtta 16543464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 155 - 222
Target Start/End: Original strand, 37945521 - 37945588
Alignment:
Q  155 ctttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaatgtta 222  Q
    |||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||    
T  37945521 ctttatattagtaagttagagtccattaaattttattatatattctcttataaccttttgtaatgtta 37945588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 125 - 213
Target Start/End: Original strand, 16869513 - 16869601
Alignment:
Q  125 taataaagtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttttattatatattctcttataacctttt 213  Q
    |||||||||||||| ||||||||| |||   ||||||||||||||||||||| | |||| |||||||||||| ||||||||||| ||||    
T  16869513 taataaagtattgagcttaagttattgggcttttatattagtaagttagagttcattagattttattatatactctcttataacttttt 16869601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 24131825 - 24131880
Alignment:
Q  167 aagttagagtccgttaggttttattatatattctcttataaccttttgtaatgtta 222  Q
    |||||||||||| |||||||||||||||| |||||||||||| |||||||||||||    
T  24131825 aagttagagtccattaggttttattatatgttctcttataacattttgtaatgtta 24131880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 54146651 - 54146724
Alignment:
Q  155 ctttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaatgttaggctatt 229  Q
    |||||||||||||||||||||||| ||| | ||||| ||||||||||| ||||| ||||||||| ||| ||||||    
T  54146651 ctttatattagtaagttagagtccatta-gatttatcatatattctctcataacattttgtaatattaagctatt 54146724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 24226122 - 24226171
Alignment:
Q  191 tatatattctcttataaccttttgtaatgttaggctattttggtattctata 242  Q
    |||||||||||| |||||||||||||||||||  |||  |||||||||||||    
T  24226122 tatatattctctaataaccttttgtaatgttaaacta--ttggtattctata 24226171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 52849409 - 52849357
Alignment:
Q  166 taagttagagtccgttaggttttattatatattctcttataaccttttgtaat 218  Q
    ||||||||||||| ||| ||||||||||||||||||   || |||||||||||    
T  52849409 taagttagagtccattaagttttattatatattctcgagtatccttttgtaat 52849357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 54148313 - 54148364
Alignment:
Q  156 tttatattagtaagttagagtccgttaggttttattatatattctcttataac 208  Q
    |||||||||||||||||||||||  || | ||||||||||||||||| |||||    
T  54148313 tttatattagtaagttagagtccaata-gatttattatatattctctcataac 54148364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 8e-27; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 22868499 - 22868572
Alignment:
Q  156 tttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaatgttaggctatt 229  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  22868499 tttatattagtaagttagagtccattaggttttattatatattctcttataactttttgtaatgttatgctatt 22868572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 9290728 - 9290660
Alignment:
Q  155 ctttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaatgttag 223  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9290728 ctttatattaataagttagagtccattaggttttattatatattctcttataaccttttgtaatgttag 9290660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 119 - 221
Target Start/End: Complemental strand, 33424087 - 33423985
Alignment:
Q  119 gttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaat 218  Q
    |||| ||||||||||||||| ||||||||| ||  ||||||||||||||||||| ||| | ||||||||||||||||||||||  |||||| ||||||||    
T  33424087 gttagataataaagtattgagcttaagttattgcgtctttatattagtaagttaaagttcattaggttttattatatattctcccataaccctttgtaat 33423988  T
Q  219 gtt 221  Q
    |||    
T  33423987 gtt 33423985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 118 - 219
Target Start/End: Original strand, 18984497 - 18984598
Alignment:
Q  118 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaa 217  Q
    |||||||||||||| |||||  ||||  ||| |||  |||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| ||||    
T  18984497 tgttaaataataaaatattgggcttagattattgggcctttatattagtaagttagagtacattatgttttattatatattctcttataacctttagtaa 18984596  T
Q  218 tg 219  Q
    ||    
T  18984597 tg 18984598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 202
Target Start/End: Original strand, 21862689 - 21862773
Alignment:
Q  118 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttttattatatattctct 202  Q
    ||||| ||||||||||||||| |||||| || ||| |||||||||||| |||||||||| | |||||||||||||||||||||||    
T  21862689 tgttagataataaagtattgagcttaagctattgggtctttatattagcaagttagagtgcattaggttttattatatattctct 21862773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 118 - 218
Target Start/End: Original strand, 10741772 - 10741871
Alignment:
Q  118 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaa 217  Q
    ||||| |||||||| |||||  ||||||||| ||| |||||||||||| |||||||||||| ||| | ||||||||||||||||| ||||| ||||||||    
T  10741772 tgttagataataaaatattgggcttaagttattgggtctttatattagaaagttagagtccatta-gatttattatatattctctcataacattttgtaa 10741870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 18792914 - 18792850
Alignment:
Q  158 tatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaatgtta 222  Q
    ||||||||||||||| ||| | ||| |||||||| ||||||||||||||||||||||||||||||    
T  18792914 tatattagtaagttaaagtgcattaagttttattgtatattctcttataaccttttgtaatgtta 18792850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 218
Target Start/End: Original strand, 10740573 - 10740671
Alignment:
Q  117 ctgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgta 216  Q
    |||||| |||||||| |||||  ||||||||| ||  |||||||||||| || ||||||||| ||| |||| |||||||||||||| ||||| |||||||    
T  10740573 ctgttagataataaaatattgggcttaagttattg--tctttatattagcaaattagagtccattacgttt-attatatattctctcataacattttgta 10740669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 236581 - 236632
Alignment:
Q  121 taaataataaagtattgaacttaagttactggatctttatattagtaagtta 172  Q
    |||||||||||||||||| ||||||||| ||| ||||||||||| |||||||    
T  236581 taaataataaagtattgagcttaagttattgggtctttatattactaagtta 236632  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 222
Target Start/End: Original strand, 13166434 - 13166538
Alignment:
Q  117 ctgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgta 216  Q
    |||||| |||||||||| |||  ||||||||   || || ||||||||  |||||||||| | ||| || |||||||||||||||| |||||||||| ||    
T  13166434 ctgttagataataaagttttgggcttaagttggcgggtccttatattaacaagttagagttcattaagtgttattatatattctctcataacctttt-ta 13166532  T
Q  217 atgtta 222  Q
    ||||||    
T  13166533 atgtta 13166538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 28064723 - 28064663
Alignment:
Q  170 ttagagtccgttaggttttat-tatatattctcttataaccttttgtaatgttaggctatt 229  Q
    ||||||||| ||||||||||| | ||||||||||  |||||||||||||||||| ||||||    
T  28064723 ttagagtccattaggttttatatttatattctctagtaaccttttgtaatgttaagctatt 28064663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 28063066 - 28063008
Alignment:
Q  170 ttagagtccgttaggttttattatatattctcttataaccttttgtaatgttaggctatt 229  Q
    ||||||||| |||| |||||| |||||||||||  |||||||||||||||||| ||||||    
T  28063066 ttagagtccattagattttat-atatattctctagtaaccttttgtaatgttaagctatt 28063008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 9365155 - 9365114
Alignment:
Q  180 ttaggttttattatatattctcttataaccttttgtaatgtta 222  Q
    ||||||||||| |||||||||||| ||||||||||||||||||    
T  9365155 ttaggttttat-atatattctcttgtaaccttttgtaatgtta 9365114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 8e-24; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 118 - 218
Target Start/End: Complemental strand, 11320585 - 11320486
Alignment:
Q  118 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaa 217  Q
    ||||| ||||||| |||||  |||||||||| ||| |||||||||||||||||| |||||| |||  |||||||||||||||||||||||||||||||||    
T  11320585 tgttagataataatgtattagacttaagttattggctctttatattagtaagttggagtccattaa-ttttattatatattctcttataaccttttgtaa 11320487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 126 - 222
Target Start/End: Original strand, 24137606 - 24137702
Alignment:
Q  126 aataaagtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaatgtta 222  Q
    ||||||||||||| ||| ||||| |||  ||||| | |||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||    
T  24137606 aataaagtattgagcttcagttattgggcctttacactagtaagttagagtctattaggttttattatatattctcttataaccttctgtaatgtta 24137702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 229
Target Start/End: Complemental strand, 11344028 - 11343924
Alignment:
Q  124 ataataaagtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttttattatatattctcttataac-cttttgtaatgtta 222  Q
    ||||||||||||||  ||||| ||| ||| | ||||||||||||||||||||||  ||| ||||||||||||| |||||||||||  |||||||||||||    
T  11344028 ataataaagtattgggcttaa-ttattggctatttatattagtaagttagagtca-ttaagttttattatatactctcttataacatttttgtaatgtta 11343931  T
Q  223 ggctatt 229  Q
     ||||||    
T  11343930 agctatt 11343924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 6643402 - 6643473
Alignment:
Q  157 ttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaatgttaggctat 228  Q
    ||||||||||||| |||||||  |||  ||||||||||||||||| |||||||||||  ||||||| |||||    
T  6643402 ttatattagtaagatagagtcaattaaattttattatatattctcatataaccttttacaatgttaagctat 6643473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 9512489 - 9512562
Alignment:
Q  159 atattagtaagttagagtccgttaggttttattatatattctctt-ataaccttttgtaatgttaggctattttg 232  Q
    |||||||||| ||||||||| |||||||| |||||||||||||||   ||||||||||||| |||  ||||||||    
T  9512489 atattagtaaattagagtccattaggttt-attatatattctcttgcaaaccttttgtaatattaatctattttg 9512562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 17749736 - 17749800
Alignment:
Q  156 tttatattagtaagttag-agtccgttaggttttattatatattctcttataaccttttgtaatgt 220  Q
    ||||||||| |||||||| ||||||||| |||||||| |||||||| || |||| |||||||||||    
T  17749736 tttatattactaagttagcagtccgttacgttttatt-tatattcttttgtaactttttgtaatgt 17749800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 219
Target Start/End: Original strand, 20242727 - 20242828
Alignment:
Q  118 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaa 217  Q
    |||||||||||||| ||||| | |||||||| |||| |||||||||||||||||| ||||  |||  |||||||||||||||| ||||||| ||| ||||    
T  20242727 tgttaaataataaaatattggatttaagttattggacctttatattagtaagttaaagtcttttaaattttattatatattctgttataacatttagtaa 20242826  T
Q  218 tg 219  Q
    ||    
T  20242827 tg 20242828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 219
Target Start/End: Complemental strand, 20250433 - 20250332
Alignment:
Q  118 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaa 217  Q
    |||||||||||||| ||||| | |||||||| |||| |||||||||||||||||| ||||  |||  |||||||||||||||| ||||||| ||| ||||    
T  20250433 tgttaaataataaaatattggatttaagttattggacctttatattagtaagttaaagtcttttaaattttattatatattctgttataacatttagtaa 20250334  T
Q  218 tg 219  Q
    ||    
T  20250333 tg 20250332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 20241063 - 20241126
Alignment:
Q  156 tttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaatg 219  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||    
T  20241063 tttatagtagtaagttagagtccgttagattttattatatattctcttataacatttagtaatg 20241126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 20252004 - 20251941
Alignment:
Q  156 tttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaatg 219  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||    
T  20252004 tttatagtagtaagttagagtccgttagattttattatatattctcttataacatttagtaatg 20251941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 218
Target Start/End: Original strand, 43414101 - 43414199
Alignment:
Q  118 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaa 217  Q
    |||||||||||||||||||| ||| |||||| || |  ||||||||| |||||||||||||| ||  ||| |||||||||||||| ||||||||||||||    
T  43414101 tgttaaataataaagtattggact-aagttattgaacttttatattaataagttagagtccgctaaattt-attatatattctctcataaccttttgtaa 43414198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 118 - 205
Target Start/End: Original strand, 43615458 - 43615545
Alignment:
Q  118 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttttattatatattctcttat 205  Q
    ||||| |||||||| |||||||||| ||||| ||    ||||||||||||||||||||||| |||| |||||||||||||| ||||||    
T  43615458 tgttagataataaaatattgaactttagttattgagcttttatattagtaagttagagtccattagattttattatatattttcttat 43615545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 33199415 - 33199514
Alignment:
Q  124 ataataaagtattgaacttaagttactggatctttatattagtaagttagagtccg-ttaggttttattatatattctcttataaccttttgtaatgtta 222  Q
    ||||||||||||||| ||||||||| ||    ||||||||||||||| |||||    |||||||||||||||||||  ||||||| ||||||||||||||    
T  33199415 ataataaagtattgatcttaagttattgagcttttatattagtaagtcagagtataattaggttttattatatatttccttataatcttttgtaatgtta 33199514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 44374651 - 44374714
Alignment:
Q  158 tatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaatgtt 221  Q
    ||||||||| ||||||||||  ||| ||||||||||||||||| |||||| ||||| |||||||    
T  44374651 tatattagtgagttagagtctattatgttttattatatattcttttataatcttttttaatgtt 44374714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 261
Target Start/End: Original strand, 43516178 - 43516262
Alignment:
Q  170 ttagagtccgttaggttttattatatattctcttataaccttttgtaatgttaggctattttggtattctatatattgaaaccctagccgtc 261  Q
    ||||||||| ||||||||||| |||||||||||  ||||||| |||||||||| ||||   ||||||||    |||||||||||||||||||    
T  43516178 ttagagtccattaggttttat-atatattctctagtaaccttatgtaatgttaagcta--atggtattc----tattgaaaccctagccgtc 43516262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 16578856 - 16578791
Alignment:
Q  155 ctttatattagtaagttag-agtccgttaggttttattatatattctcttataaccttttgtaatgt 220  Q
    |||||||||| |||||||| ||||| |||| |||||| ||||||||| || ||||||||||||||||    
T  16578856 ctttatattactaagttagcagtccattagattttat-atatattctattgtaaccttttgtaatgt 16578791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 222
Target Start/End: Complemental strand, 20093403 - 20093307
Alignment:
Q  124 ataataaagtattgaacttaagttactggatctttatattagtaagttag-agtccgttaggttttattatatattctcttataaccttttgtaatgtta 222  Q
    |||||||||||||   | ||||||| ||||| ||||||||| ||| |||| ||||  |||||||||||   |||||||||| |||||| |||||||||||    
T  20093403 ataataaagtattaggcataagttattggatatttatattactaaattagcagtctattaggttttat---atattctcttgtaacctcttgtaatgtta 20093307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 118 - 218
Target Start/End: Complemental strand, 406356 - 406256
Alignment:
Q  118 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaa 217  Q
    ||||| |||||||||||||    |||||||| |||  ||||||||||| |||||||||||| ||| ||||||||||||||||| |||||||||||| |||    
T  406356 tgttagataataaagtattaggtttaagttattgggcctttatattagcaagttagagtcctttaagttttattatatattctattataaccttttctaa 406257  T
Q  218 t 218  Q
    |    
T  406256 t 406256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 11227 - 11291
Alignment:
Q  158 tatattagtaagttagagtccgttaggttttattatatattctcttataaccttttgtaatgtta 222  Q
    ||||||||||||||| ||| | ||| |||||||| ||||||||||||||||||||||||||||||    
T  11227 tatattagtaagttaaagtgcattaagttttattgtatattctcttataaccttttgtaatgtta 11291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 229
Target Start/End: Complemental strand, 14638 - 14526
Alignment:
Q  118 tgttaaataataaagtattgaacttaagttactggatctttat-attagtaagtt-agagtccgttaggttttattatatattctcttataaccttttgt 215  Q
    ||||| ||||||||||||||  |||||| || |||  |||||| |||| |||||| | |||| |||||||||||| ||||||||||||||||||||||||    
T  14638 tgttagataataaagtattgggcttaagctattgggcctttatcattactaagttcatagtctgttaggttttat-atatattctcttataaccttttgt 14540  T
Q  216 aatgttaggctatt 229  Q
    | | ||| ||||||    
T  14539 agtattaagctatt 14526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 192
Target Start/End: Complemental strand, 14364 - 14290
Alignment:
Q  118 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccgttaggttttatta 192  Q
    |||||||||||||| |||||  ||||| |||  ||  |||||||||||||||||||||| ||||| |||||||||    
T  14364 tgttaaataataaaatattgggcttaaattatggggcctttatattagtaagttagagtacgttatgttttatta 14290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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