View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_122 (Length: 295)
Name: NF8810A_low_122
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_122 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 7 - 284
Target Start/End: Complemental strand, 35450052 - 35449775
Alignment:
| Q |
7 |
tttggtgttagtacttcaatcattgattgttcaataattggtgaagaaacaatgctttcttcacaatctgatgaagacaaagaaaaaccattgtttgagt |
106 |
Q |
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| T |
35450052 |
tttggtgttagtacttcaatcattgattgatcaataattggtgaagaaacaatgctttcttcacaatctgaagaagacaaagaaaaaccattgtttgagt |
35449953 |
T |
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| Q |
107 |
caattccttttcttgtaacttgttcatcttcaatgctcgaaactccggaaagtggagcattttgttgttgatggaaaactagcttttccaagagaagtct |
206 |
Q |
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| T |
35449952 |
caattccttttcttgtaacttgttcatcttcaatgcttgaaactccggaaagtggatcattttgttgttgatggaaaactagcttttccaagagaagtct |
35449853 |
T |
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| Q |
207 |
ttcacatttttcttgtgcttcatctctttctctaatgatgttgttgattagatctttaaggttcattagttgttcatc |
284 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35449852 |
ttgacatttttcttgtgcttcatctctttctctaatgatgttgttgattagatctttaaggttcattagttgttcatc |
35449775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 171 - 284
Target Start/End: Original strand, 21010633 - 21010746
Alignment:
| Q |
171 |
ttgttgatggaaaactagcttttccaagagaagtctttcacatttttcttgtgcttcatctctttctctaatgatgttgttgattagatctttaaggttc |
270 |
Q |
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|||||| ||||||| || |||||| |||| |||||||| ||||||||||||||||||||||||||||| || | ||||||| || ||||| ||||| |
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| T |
21010633 |
ttgttgttggaaaagtaacttttctaagaaaagtctttggcatttttcttgtgcttcatctctttctcttataactttgttgaaaagttcttttaggtta |
21010732 |
T |
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| Q |
271 |
attagttgttcatc |
284 |
Q |
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| T |
21010733 |
tgtagttgttcatc |
21010746 |
T |
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