View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_123 (Length: 294)
Name: NF8810A_low_123
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_123 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 54 - 288
Target Start/End: Complemental strand, 1403227 - 1402994
Alignment:
| Q |
54 |
gggactaaacccggaaaagatacatattgcaaggactaaacagttattcattcttttctataagctgagagaaacaatnnnnnnntgagagtacaaggtt |
153 |
Q |
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| T |
1403227 |
gggactaaatccggaaaagatacatattgcaaggactaaacagttcttcattcttttctataagctgagagaaacaataaaaaa-tgagagtacaaggtt |
1403129 |
T |
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| Q |
154 |
cagcaatttgaatatgatagttcaaaattttggtttttccagtgggagaagtgctacctctttcacaagtgcgtaatgatgtagcaactgctttcaaaag |
253 |
Q |
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| T |
1403128 |
cagcaatttgaatatgatagttcaaaatttttgtttttccagtgggagaagtgctacctctttcacaagtgcgtaatgatgtagcaactgctttcaaaag |
1403029 |
T |
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| Q |
254 |
ggaagtggagtggcaaacaaatcaaatgcttctac |
288 |
Q |
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| T |
1403028 |
ggaagtggagtggcaaacaaatcaaatgcttctac |
1402994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 1403307 - 1403239
Alignment:
| Q |
3 |
cgactgatatgaaaacaacaagacgaaaaccaactttttccaatgttttgggggactaaacccggaaaa |
71 |
Q |
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| T |
1403307 |
cgactgagatgaaaacaacaagacgaaaaccaactttttccaatgttttgggggactaaacccgaaaaa |
1403239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 190 - 288
Target Start/End: Original strand, 40682087 - 40682184
Alignment:
| Q |
190 |
ttccagtgggagaagtgctacctctttcacaagtgcgtaatgatgtagcaactgctttcaaaagggaagtggagtggcaaacaaatcaaatgcttctac |
288 |
Q |
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| T |
40682087 |
ttccaatggaagatgtgctccctctttcacaagtgtgtaatgatgtagcaattgctttcgaaaggtaagtggagtggcaaa-aaatctaatgcttctac |
40682184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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