View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8810A_low_127 (Length: 292)

Name: NF8810A_low_127
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8810A_low_127
NF8810A_low_127
[»] chr1 (3 HSPs)
chr1 (42-290)||(8756338-8756586)
chr1 (45-287)||(8748790-8749032)
chr1 (45-287)||(8766360-8766602)


Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 42 - 290
Target Start/End: Complemental strand, 8756586 - 8756338
Alignment:
Q  42 aatatcacaacttgctttcttatacgcttctctatgcctaatctccattggagctggtggtgtaagagcctcttccttagcctttggcattgaccaacta 141  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8756586 aatatcacaacttgctttcttatactcttctctatgcctaatctccattggagctggtggtgtaagagcctcttccttagcctttggcattgaccaacta 8756487  T
Q  142 gacaaggaaaaagatgcaggaatcatagagggctactttaattggagctatgctttaacagcagctgcagttttaattggaacgaccatcttggcataca 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8756486 gacaaggaaaaagatgcaggaatcatagagggctactttaattggagctatgctttaacagcagctgcagttttaattggaacgaccatcttggcgtaca 8756387  T
Q  242 ttcaagaaaattttggttggattattggatttggtgtccctgttgtctt 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8756386 ttcaagaaaattttggttggattattggatttggtgtccctgttgtctt 8756338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 45 - 287
Target Start/End: Complemental strand, 8749032 - 8748790
Alignment:
Q  45 atcacaacttgctttcttatacgcttctctatgcctaatctccattggagctggtggtgtaagagcctcttccttagcctttggcattgaccaactagac 144  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  8749032 atcacaacttgctttcttatactcttctctatgcctaatcgccattggagctggtggtgtaagagcttcttccttaccctttggcattgaccaactagac 8748933  T
Q  145 aaggaaaaagatgcaggaatcatagagggctactttaattggagctatgctttaacagcagctgcagttttaattggaacgaccatcttggcatacattc 244  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||| |||||||| ||||    
T  8748932 aaggaaaaagatgcaggaatcatagagggctactttaattggacctatgctttagcaacagctgcagttttaattggaacgaccattttggcatatattc 8748833  T
Q  245 aagaaaattttggttggattattggatttggtgtccctgttgt 287  Q
    |||||||||||||||||||| ||||||||||| | ||||||||    
T  8748832 aagaaaattttggttggattgttggatttggtttacctgttgt 8748790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 45 - 287
Target Start/End: Complemental strand, 8766602 - 8766360
Alignment:
Q  45 atcacaacttgctttcttatacgcttctctatgcctaatctccattggagctggtggtgtaagagcctcttccttagcctttggcattgaccaactagac 144  Q
    |||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| || || ||||||||||||||||| |||||| ||    
T  8766602 atcacagcttgctttcttatactcttctctatgcttaatctccattggagctggtggtgtaagagcttcctctttagcctttggcattgatcaactaaac 8766503  T
Q  145 aaggaaaaagatgcaggaatcatagagggctactttaattggagctatgctttaacagcagctgcagttttaattggaacgaccatcttggcatacattc 244  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||| ||||| |||| | |||||||| ||||    
T  8766502 aaggaaaaagatgcaggaatcatagagggctactttaattggacctatgctttaacagcagctgcagtcctaactggaatgaccgttttggcatatattc 8766403  T
Q  245 aagaaaattttggttggattattggatttggtgtccctgttgt 287  Q
    |||||| ||||||||||||  ||||||||||||| ||||||||    
T  8766402 aagaaatttttggttggatggttggatttggtgtacctgttgt 8766360  T

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