View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_129 (Length: 290)
Name: NF8810A_low_129
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_129 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 24 - 277
Target Start/End: Original strand, 36034825 - 36035077
Alignment:
| Q |
24 |
tctttatcgttactttgtatttttctgcaacttattatatgtacgtatgttannnnnnnnnnnnngaagtcctgagagatgatatttaattgtcgttata |
123 |
Q |
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| T |
36034825 |
tctttatcgttactttgtatttttctgcaacttattatatgtacgtatgttattttttaatttttgaagtcctgagagatgatatttaattgtcgttata |
36034924 |
T |
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| Q |
124 |
taatatcaagaaaaatggcaaaattaaaatttgatatagtagattatcataatgttaaaatccttgaaaaacagagagcatcttttctcacattattaag |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36034925 |
taatatcaagaaaaatggcaaaattaaaatttgatatagtagattatcataatgttaaaatccttgaaaaacagagagcatcttttctcacattattaag |
36035024 |
T |
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| Q |
224 |
acatatagtcggctcaactgtgaatacaactataaaattcttgctttgatgtcc |
277 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
36035025 |
acatatagtcggctcaactgtgaat-caactataaaattcttgctttggtgtcc |
36035077 |
T |
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