View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8810A_low_131 (Length: 288)
Name: NF8810A_low_131
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_131 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 2 - 282
Target Start/End: Complemental strand, 34660246 - 34659966
Alignment:
| Q |
2 |
atatacttgtagtatactagtaatgtaataaatatcattcccctctttttctatctttgtctctgccatgatatacatgcttgtttatcttagtttcatc |
101 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34660246 |
atatgcttgtagtatactagtaatgtaataaatatcattcccctctttttctatctttgtctctgccatgatatacatgcttgtttatcttagtttcatc |
34660147 |
T |
|
| Q |
102 |
ttcttacatttgggaacgtgccacactaatcatgcttaatttgtttaattttttcataaactataatgcataaacaacatatgtaattatttcaccaatc |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34660146 |
ttcttacatttgggaacgtgccacactaatcatgcttaatttgtttaattttttcataaactataatgcataaacaacatatgtaattatttcaccaatc |
34660047 |
T |
|
| Q |
202 |
aacatgagtgaagaagtactattttcgcatggaaaaccctgttacataatcatatttgacattcaatttttgtgggaggat |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34660046 |
aacatgagtgaagaagtactattttcgcatggaaaaccctgttacataatcatatttgacattcaatttttgtgggaggat |
34659966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University