View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8810A_low_132 (Length: 288)

Name: NF8810A_low_132
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8810A_low_132
NF8810A_low_132
[»] chr1 (16 HSPs)
chr1 (13-282)||(13244659-13244928)
chr1 (12-179)||(13271474-13271641)
chr1 (43-263)||(13085911-13086131)
chr1 (36-188)||(30368269-30368421)
chr1 (13-180)||(12964013-12964180)
chr1 (36-256)||(13100812-13101031)
chr1 (12-263)||(13081002-13081253)
chr1 (36-188)||(13070337-13070489)
chr1 (12-188)||(13094278-13094454)
chr1 (36-258)||(13007009-13007231)
chr1 (12-180)||(19279305-19279473)
chr1 (36-258)||(13204268-13204490)
chr1 (12-188)||(13129707-13129883)
chr1 (12-188)||(13161400-13161576)
chr1 (41-262)||(13065379-13065600)
chr1 (120-179)||(13010661-13010720)
[»] chr6 (1 HSPs)
chr6 (57-148)||(31380253-31380344)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 282
Target Start/End: Original strand, 13244659 - 13244928
Alignment:
Q  13 agatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagct 112  Q
    ||||||||||| | ||||||||| ||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13244659 agatggatatcagctagaggagggattataaatgtaccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatcttagct 13244758  T
Q  113 ttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcg 212  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||    
T  13244759 tcgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaacttctattgtcgttcg 13244858  T
Q  213 catgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttgatataacaaagttgcaagtgtgatg 282  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  13244859 catgaaacacggcttaaaggtcgaagtcagtaaaagatgcatttgatataacaaagttgtaagtgtgatg 13244928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 12 - 179
Target Start/End: Complemental strand, 13271641 - 13271474
Alignment:
Q  12 gagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagc 111  Q
    |||||||||||| | || ||||   ||| ||||||| || ||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||    
T  13271641 gagatggatatcagataaaggacaaattatacatgtaccatcttacaagttcatagcattcaatgcaggtcctagaagctgtcttgggaaagatattagc 13271542  T
Q  112 tttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtca 179  Q
    ||| |||||||||||||||||||||||||| | ||||||||||||| |||||| ||||||||||||||    
T  13271541 tttattcaaatgaaaatggttgcagcttctgtattatggaagtttcacatacatgtggtggaaggtca 13271474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 43 - 263
Target Start/End: Complemental strand, 13086131 - 13085911
Alignment:
Q  43 catgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctt 142  Q
    ||||| || |||| |||||||||||| || |||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||     
T  13086131 catgtaccatcttgcaagttcatagcatttaatgcaggtcctcgaagttgtcttgggaaagatattagcattgttcaaatgaaaatggttgcagctgcta 13086032  T
Q  143 tgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcag 242  Q
    ||||||||||||||| |||||| || |||||||||||  ||||||| |  |||  ||||||||  || |||||| |||| || || || ||| || | ||    
T  13086031 tgttatggaagtttcacatacaagttgtggaaggtcattctgtaactccaagagtttctattgttctccgcatggaacatggattcaaagtcaaagttag 13085932  T
Q  243 taaaagatgcatttgatataa 263  Q
    ||||||||| |||||||||||    
T  13085931 taaaagatgaatttgatataa 13085911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 36 - 188
Target Start/End: Original strand, 30368269 - 30368421
Alignment:
Q  36 cattgtacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgca 135  Q
    |||| ||||||| || |||||||||||||||||||||||| |||| |||||||||||||| || |||||| |||| || ||||||||||| |||||||||    
T  30368269 cattatacatgtaccatcttacaagttcatagctttcaatacaggacctagaagttgtatgggtaaagatcttagtttcgttcaaatgaagatggttgca 30368368  T
Q  136 gcttctttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaac 188  Q
    ||| | |||||||||||||||| ||||||||| ||||||||||||||||||||    
T  30368369 gctgccttgttatggaagtttcacatacaggtcgtggaaggtcaccctgtaac 30368421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 13 - 180
Target Start/End: Original strand, 12964013 - 12964180
Alignment:
Q  13 agatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagct 112  Q
    |||||||||||   ||||||||  ||| |||| || || ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12964013 agatggatatcaaatagaggagaaattatacaagtgccatcttataagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatattagct 12964112  T
Q  113 ttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtcac 180  Q
    |||||||||||||||||||||| |||  | |||| |||||||||| |||| | |||||||||||||||    
T  12964113 ttgttcaaatgaaaatggttgctgctaatgtgttgtggaagtttcacatagaagtggtggaaggtcac 12964180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 36 - 256
Target Start/End: Complemental strand, 13101031 - 13100812
Alignment:
Q  36 cattgtacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgca 135  Q
    |||| ||||||| || |||||||||||||||||||||||| |||| |||||||||||||| || || |||||||||||  |||||||||| ||||| |||    
T  13101031 cattatacatgtaccatcttacaagttcatagctttcaat-caggacctagaagttgtatgggtaaggatattagcttcattcaaatgaagatggtcgca 13100933  T
Q  136 gcttctttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcg 235  Q
    ||| ||||||||  |||||||| ||||||||||||||||||||||||| |||| | ||    |||| |||  |||| ||||||||| ||||| ||||||     
T  13100932 gctgctttgttaccgaagtttcacatacaggtggtggaaggtcaccctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggtca 13100833  T
Q  236 aaatcagtaaaagatgcattt 256  Q
    || ||| ||||||||||||||    
T  13100832 aagtcactaaaagatgcattt 13100812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 12 - 263
Target Start/End: Original strand, 13081002 - 13081253
Alignment:
Q  12 gagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagc 111  Q
    |||||||||||| | |||||||   ||| |||| || |||||||| ||||||||||| || ||||||||||| ||||| ||| ||||||||||||||||     
T  13081002 gagatggatatcagatagaggacaaattatacaagtgccgtcttataagttcatagcgtttaatgcaggtccaagaagctgtcttgggaaagatattagt 13081101  T
Q  112 tttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttc 211  Q
    ||| ||||||||||||||||||||||| |  | ||||  ||||||| ||| |||||||||||||||||| |  |||  |  ||   |||||||  |||||    
T  13081102 tttcttcaaatgaaaatggttgcagctgcagttttatttaagtttcacattcaggtggtggaaggtcactcaataattcctagggtttctattctccttc 13081201  T
Q  212 gcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttgatataa 263  Q
    ||||| |||| ||||| |||||| ||||  ||||||||||||||||||||||    
T  13081202 gcatggaacatggctttaaggtcaaaattcgtaaaagatgcatttgatataa 13081253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 36 - 188
Target Start/End: Original strand, 13070337 - 13070489
Alignment:
Q  36 cattgtacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgca 135  Q
    |||| ||||||| || |||||||||||||||||||||||| ||||||| ||||||||| | || |||||| |||| ||  |||||||||| ||||| |||    
T  13070337 cattatacatgttccatcttacaagttcatagctttcaatacaggtccgagaagttgtttgggtaaagatcttagtttcattcaaatgaagatggtcgca 13070436  T
Q  136 gcttctttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaac 188  Q
    ||| ||||||||  |||||||| ||||||||||||||||||||||||||||||    
T  13070437 gctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaac 13070489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 12 - 188
Target Start/End: Complemental strand, 13094454 - 13094278
Alignment:
Q  12 gagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagc 111  Q
    |||||||||||| |  || ||||  ||| ||||||| || |||||||||||||||||||||||  |||| || |||| |||||| || |||||||||||     
T  13094454 gagatggatatctgagaggggagatattatacatgtaccatcttacaagttcatagctttcaacacaggacccagaatttgtataggtaaagatattagt 13094355  T
Q  112 tttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaac 188  Q
    ||  |||||||||| ||||| |||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  13094354 ttcattcaaatgaagatggtcgcagctgctttgttacggaagtttcacatacaggtggtggaaggtcaccctgtaac 13094278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 36 - 258
Target Start/End: Complemental strand, 13007231 - 13007009
Alignment:
Q  36 cattgtacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgca 135  Q
    |||| ||||||| || |||||||||||||||||||||||| ||||||||||||||||||| || || |||||||||||  |||||||||| ||||| |||    
T  13007231 cattatacatgtaccatcttacaagttcatagctttcaatacaggtcctagaagttgtatgggcaaggatattagcttcattcaaatgaagatggtcgca 13007132  T
Q  136 gcttctttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcg 235  Q
    ||  ||||||||   ||||||| |||| ||||||||| |||||||||| |||| | ||    |||| |||  |||| ||||||||| ||||| |||||      
T  13007131 gcagctttgttaccaaagtttcacataaaggtggtggcaggtcaccctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggtta 13007032  T
Q  236 aaatcagtaaaagatgcatttga 258  Q
    || ||| ||||||||||||||||    
T  13007031 aagtcactaaaagatgcatttga 13007009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 12 - 180
Target Start/End: Original strand, 19279305 - 19279473
Alignment:
Q  12 gagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagc 111  Q
    |||||||||||||| |||||||   ||| ||||||| || || |||||||||||||| || ||||||||||| ||||| ||| | || ||||||||||      
T  19279305 gagatggatatcggatagaggacaaattatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattact 19279404  T
Q  112 tttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtcac 180  Q
    ||  ||||||||||||||||||||||| || | ||||||||||||||||||||||| ||||||||||||    
T  19279405 ttccttcaaatgaaaatggttgcagctgctgtattatggaagtttcgcatacaggtcgtggaaggtcac 19279473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 36 - 258
Target Start/End: Complemental strand, 13204490 - 13204268
Alignment:
Q  36 cattgtacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgca 135  Q
    |||| ||||||| || |||||||||||||||||||||||| ||||||||||||||||| | || |||||| |||| ||  |||||||||| ||||| |||    
T  13204490 cattatacatgtaccatcttacaagttcatagctttcaatacaggtcctagaagttgtttgggtaaagatcttagtttcattcaaatgaagatggtcgca 13204391  T
Q  136 gcttctttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcg 235  Q
    ||| ||||||||  ||| |||| |||| || | |||||||||||||||||||| |  |  | |||| |||  |||| ||||||| | || ||||||||      
T  13204390 gctgctttgttacagaattttcacataaagatagtggaaggtcaccctgtaaccccaaagatttcttttgttcttcacatgaaatatggtttaaaggtta 13204291  T
Q  236 aaatcagtaaaagatgcatttga 258  Q
    || ||| ||||||||||||||||    
T  13204290 aagtcactaaaagatgcatttga 13204268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 12 - 188
Target Start/End: Complemental strand, 13129883 - 13129707
Alignment:
Q  12 gagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagc 111  Q
    |||||||||||| |  || ||||  ||| ||||||| || |||||||||||| ||||||||||  |||| || |||| |||||| || |||||| ||||     
T  13129883 gagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgtataggtaaagatcttagt 13129784  T
Q  112 tttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaac 188  Q
    ||  |||||||||| ||||| |||||| ||||||||  |||||||| ||||||||||||||||||||||||||||||    
T  13129783 ttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaac 13129707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 12 - 188
Target Start/End: Complemental strand, 13161576 - 13161400
Alignment:
Q  12 gagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagc 111  Q
    |||||||||||| |  || ||||  ||| ||||||| || ||||||||||||||| |||||||  |||| || |||| |||||| || |||||| ||||     
T  13161576 gagatggatatctgagaggggagatattatacatgtaccttcttacaagttcatatctttcaacacaggacccagaatttgtataggtaaagatcttagt 13161477  T
Q  112 tttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaac 188  Q
    ||  |||||||||| ||||| |||||| |||||||| ||||||||| ||||||||||||||||||||||| ||||||    
T  13161476 ttcattcaaatgaagatggtcgcagctgctttgttacggaagtttcacatacaggtggtggaaggtcaccttgtaac 13161400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 41 - 262
Target Start/End: Original strand, 13065379 - 13065600
Alignment:
Q  41 tacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttc 140  Q
    ||||||| |||||||||||||||||||||||||||||||| || ||||||||| | || |||||||| | ||| ||| ||||||| |||| ||| ||  |    
T  13065379 tacatgtaccgtcttacaagttcatagctttcaatgcagggccaagaagttgtttgggtaaagatatcaccttcgttgaaatgaagatggctgccgcggc 13065478  T
Q  141 tttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatc 240  Q
    | |  ||||||||||| |||||||  | ||||| ||||| |||||||| |  ||   ||||||| ||||  | |||||||| ||||| ||||||  | ||    
T  13065479 tatactatggaagttttgcatacatttagtggatggtcatcctgtaactccaaggctttctattaccctcggaatgaaacatggcttgaaggtcatagtc 13065578  T
Q  241 agtaaaagatgcatttgatata 262  Q
    | ||||||||||||||||||||    
T  13065579 actaaaagatgcatttgatata 13065600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 179
Target Start/End: Complemental strand, 13010720 - 13010661
Alignment:
Q  120 aatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtca 179  Q
    |||||| ||||| ||||||  |||||||||||| ||||||||||| ||||||||||||||    
T  13010720 aatgaagatggtcgcagctgatttgttatggaaatttcgcatacaagtggtggaaggtca 13010661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 148
Target Start/End: Original strand, 31380253 - 31380344
Alignment:
Q  57 caagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttat 148  Q
    |||||||||| |||||||| |||| ||  ||||||||||||| |||||| |||| ||  ||||||| || |||  ||| |||||||||||||    
T  31380253 caagttcatatctttcaatacaggacccggaagttgtattggtaaagatcttagtttcattcaaattaagatgtctgcggcttctttgttat 31380344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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