View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_135 (Length: 287)
Name: NF8810A_low_135
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_135 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 6 - 275
Target Start/End: Complemental strand, 16308414 - 16308139
Alignment:
| Q |
6 |
agaaagtgtaagttattgattgctttctaagtagtaac------agtgagactaattagatgcactgttgcagctggtgtggggtaaaatgtccatagtt |
99 |
Q |
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| T |
16308414 |
agaaagtgtaagttattgattgctttctaagtagaaactttgagagtgagactaattagatgcactgttgcagctggtgtggggtaaaatgtccatagtt |
16308315 |
T |
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| Q |
100 |
gaagcagagcgacgactgctggcaaatgcgctgcaagatcctaataaccagcactttgttttactttctgataggtaatttgcttagnnnnnnnataata |
199 |
Q |
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| T |
16308314 |
gaagcagagcgacgactgctggcaaatgcgctccaagatcctaataaccagcactttgttttactttctgataggtaatttgcttagtttttttataatc |
16308215 |
T |
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| Q |
200 |
tattattatgttttaatttctgatctttttgcattgactttgcagctgtgtgccgctgtataatttcaactatatt |
275 |
Q |
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| T |
16308214 |
tattattatgttttaatttctgatctttttgcattgactttgcagctgtgtgccgctgtataatttcaactatatt |
16308139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 44 - 275
Target Start/End: Complemental strand, 16298778 - 16298534
Alignment:
| Q |
44 |
agtgagactaattagatgcactgttgcagctggtgtggggtaaaatgtccatagttgaagcagagcgacgactgctggcaaatgcgctgcaagatcctaa |
143 |
Q |
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| T |
16298778 |
agtgagactaattagttgcattgt-gcaggtgatatggggtaaaatgtccatggttgaagcagaacgacgactgctggcaaatgcactacaagatcctaa |
16298680 |
T |
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| Q |
144 |
taaccagcactttgttttactttctgataggtaatttgcttag-----------nnnnnnnataatatatt---attatgttttaatttctgatcttttt |
229 |
Q |
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| T |
16298679 |
taaccagcacttcgttttactttctgataggtaatttgcttagttttttttttctttttatataatttatttaacttatttttttatttctgatcttttt |
16298580 |
T |
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| Q |
230 |
gcattgactttgcagctgtgtgccgctgtataatttcaactatatt |
275 |
Q |
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| T |
16298579 |
gcattggctttgcagctgtgtgccgctatataatttcgactatatt |
16298534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 176
Target Start/End: Original strand, 52957087 - 52957196
Alignment:
| Q |
67 |
ttgcagctggtgtggggtaaaatgtccatagttgaagcagagcgacgactgctggcaaatgcgctgcaagatcctaataaccagcactttgttttacttt |
166 |
Q |
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| T |
52957087 |
ttgcaggtggtgtggggtaaaatttctatggttgatgcagagagacggatattggcgactgcccttcaagatcctgataaccagcactttgttttacttt |
52957186 |
T |
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| Q |
167 |
ctgataggta |
176 |
Q |
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| T |
52957187 |
ctgataggta |
52957196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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