View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_140 (Length: 284)
Name: NF8810A_low_140
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_140 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 12 - 279
Target Start/End: Complemental strand, 34796772 - 34796505
Alignment:
| Q |
12 |
aagaagggaataacaaaaactcacatgaagcttgacatcaacaacacgacagaacacatgagaaggaatattatccgaaaaagataacggaaaatcatga |
111 |
Q |
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| T |
34796772 |
aagaagggaataacaaaaactcacatgaagcttgacatcaacaacacgacagaacacatgagaaggaatattatccgaaaaagataacggaaaatcatga |
34796673 |
T |
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| Q |
112 |
agatgttccaagtgtccttgagggaagtaaacaacaacacttcctttctttggcaaagagatcataggaccagcacaagcatgccatagctccaaacaca |
211 |
Q |
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| T |
34796672 |
agatgttccaagtgtccttgagggaagtaaacaacaacacttcctttctttggcaaagagatcataggaccagcacaagcatgccatagctccaaacaca |
34796573 |
T |
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| Q |
212 |
cagaagaagcagcaccaacactacctatgcttgtacttgaagatgaaccagaagatggtgtttcatct |
279 |
Q |
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| T |
34796572 |
cagaagaaccagcaccaacactacctatgcttgtacttgaagatgaaccagaagatggtgtttcatct |
34796505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 199
Target Start/End: Complemental strand, 22234680 - 22234596
Alignment:
| Q |
115 |
tgttccaagtgtccttgagggaagtaaacaacaacacttcctttctttggcaaagagatcataggaccagcacaagcatgccata |
199 |
Q |
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| T |
22234680 |
tgttccaagtgaccttgtggaaaatacaccacaacatttcctttcttaggaagtgaggtaagaggaccagcacaagcatgccata |
22234596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 34 - 216
Target Start/End: Original strand, 4274354 - 4274533
Alignment:
| Q |
34 |
acatgaagcttgacatcaacaacacgacagaacacatgagaaggaatattatccgaaaaagataacggaaaatcatgaagatgttccaagtgtccttgag |
133 |
Q |
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| T |
4274354 |
acatgaagcttaacatcaagaacacgacagaaaacatgaggtggaatattac---aagcagaaacaggaaaatcatgagcttgttcaaagtgtccttgtg |
4274450 |
T |
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| Q |
134 |
ggaagtaaacaacaacacttcctttctttggcaaagagatcataggaccagcacaagcatgccatagctccaaacacacagaa |
216 |
Q |
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| | |||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
4274451 |
gaacataaacaacaatgcttcctttctttggtaaagagatcaaaggaccagcacaagcatgccatagctccaaacaaacagaa |
4274533 |
T |
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