View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8810A_low_141 (Length: 283)

Name: NF8810A_low_141
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8810A_low_141
NF8810A_low_141
[»] chr6 (16 HSPs)
chr6 (15-277)||(5429692-5429954)
chr6 (160-247)||(5358028-5358115)
chr6 (165-263)||(5422310-5422408)
chr6 (170-263)||(5366613-5366706)
chr6 (165-236)||(5139448-5139519)
chr6 (183-242)||(5077000-5077059)
chr6 (158-237)||(5149594-5149673)
chr6 (68-128)||(5394577-5394637)
chr6 (172-275)||(5184762-5184865)
chr6 (10-57)||(33858287-33858334)
chr6 (15-57)||(9372977-9373019)
chr6 (30-59)||(211616-211645)
chr6 (14-59)||(4606018-4606063)
chr6 (173-221)||(5174292-5174340)
chr6 (173-221)||(5276038-5276086)
chr6 (173-221)||(5692830-5692878)
[»] chr4 (5 HSPs)
chr4 (10-59)||(44917476-44917525)
chr4 (14-55)||(26488248-26488289)
chr4 (10-59)||(27553013-27553062)
chr4 (10-59)||(49459117-49459166)
chr4 (10-58)||(43201458-43201506)
[»] chr3 (9 HSPs)
chr3 (10-59)||(31311346-31311395)
chr3 (10-59)||(37169646-37169695)
chr3 (10-58)||(23551106-23551154)
chr3 (10-57)||(4229320-4229367)
chr3 (14-59)||(38472198-38472243)
chr3 (10-59)||(52587073-52587122)
chr3 (14-58)||(16202381-16202425)
chr3 (15-59)||(42628773-42628817)
chr3 (14-62)||(46888222-46888270)
[»] chr7 (9 HSPs)
chr7 (10-57)||(36309279-36309326)
chr7 (14-59)||(736429-736474)
chr7 (14-59)||(1702914-1702959)
chr7 (10-59)||(2007209-2007258)
chr7 (14-59)||(21973973-21974018)
chr7 (14-59)||(30256077-30256122)
chr7 (10-58)||(6395228-6395276)
chr7 (14-58)||(9327917-9327961)
chr7 (14-58)||(24406942-24406986)
[»] chr2 (3 HSPs)
chr2 (10-57)||(12612130-12612177)
chr2 (10-57)||(41245621-41245668)
chr2 (10-56)||(27251607-27251653)
[»] chr8 (6 HSPs)
chr8 (9-63)||(42641371-42641425)
chr8 (10-59)||(4053118-4053167)
chr8 (14-59)||(9135309-9135354)
chr8 (10-59)||(11602960-11603009)
chr8 (14-59)||(42788105-42788150)
chr8 (5-57)||(17952692-17952744)
[»] scaffold0063 (1 HSPs)
scaffold0063 (10-59)||(52107-52156)
[»] chr5 (4 HSPs)
chr5 (14-59)||(12444237-12444282)
chr5 (14-59)||(13407941-13407986)
chr5 (10-58)||(5244747-5244795)
chr5 (15-51)||(28442671-28442707)
[»] chr1 (6 HSPs)
chr1 (10-59)||(10556054-10556103)
chr1 (10-59)||(22888198-22888247)
chr1 (14-59)||(28868007-28868052)
chr1 (14-59)||(46939666-46939711)
chr1 (14-58)||(12300795-12300839)
chr1 (10-58)||(29823874-29823922)
[»] scaffold0217 (1 HSPs)
scaffold0217 (14-54)||(1410-1450)


Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 15 - 277
Target Start/End: Complemental strand, 5429954 - 5429692
Alignment:
Q  15 aaaagtttgtatgtttgtagggacaaaaaatatatttaaccctaagtttaactacctggaatttaaaactacaaatccagcaaggtcagctgcctcacga 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5429954 aaaagtttgtatgtttgtagggacaaaaaatatatttaaccctaagtttaattacctggaatttaaaactacaaatccagcaaggtcagctgcctcacga 5429855  T
Q  115 agtgcgtctttccatttcaatgaatcgtcttcgtccttctccacctttgaaatcttattcaagagactttgaaaggcttttccaaagtcaccggtttgat 214  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5429854 agtgcgtctctccatttcaatgaatcgtcttcgtccttctccacctttgaaatcttattcaagagactttgaaaggcttttccaaagtcaccgatttgat 5429755  T
Q  215 gtcgtacttgagatggatctacaccgtagaacaatggaagaacaatttgacctatagttctct 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5429754 gtcgtacttgagatggatctacaccgtagaacaatggaagaacaatttgacctatagttctct 5429692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 247
Target Start/End: Original strand, 5358028 - 5358115
Alignment:
Q  160 tttgaaatcttattcaagagactttgaaaggcttttccaaagtcaccggtttgatgtcgtacttgagatggatctacaccgtagaaca 247  Q
    ||||||||| | ||||| ||||||||||| |||||||| || ||||| |||||||  ||||||| |||||||||||||||||||||||    
T  5358028 tttgaaatccttttcaatagactttgaaatgcttttccgaactcaccagtttgattacgtacttcagatggatctacaccgtagaaca 5358115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 263
Target Start/End: Complemental strand, 5422408 - 5422310
Alignment:
Q  165 aatcttattcaagagactttgaaaggcttttccaaagtcaccggtttgatgtcgtacttgagatggatctacaccgtagaacaatggaagaacaatttg 263  Q
    |||||||||||| ||| ||||||| ||||||||||| |||||||||||| | |||||||  |||||||||||  || ||||||  || |||||||||||    
T  5422408 aatcttattcaaaagattttgaaatgcttttccaaattcaccggtttgacgacgtacttcggatggatctacgtcgaagaacaccggcagaacaatttg 5422310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 170 - 263
Target Start/End: Complemental strand, 5366706 - 5366613
Alignment:
Q  170 tattcaagagactttgaaaggcttttccaaagtcaccggtttgatgtcgtacttgagatggatctacaccgtagaacaatggaagaacaatttg 263  Q
    ||||||| ||| ||||||| |||||||| || |||||||||||||| || ||||  ||||||||||||  | |||||| |||||||||||||||    
T  5366706 tattcaaaagaatttgaaatgcttttccgaattcaccggtttgatgacggacttccgatggatctacattgaagaacactggaagaacaatttg 5366613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 5139448 - 5139519
Alignment:
Q  165 aatcttattcaagagactttgaaaggcttttccaaagtcaccggtttgatgtcgtacttgagatggatctac 236  Q
    ||||||||| || ||| ||||||| |||||||| || |||||||||||||| ||||||| ||||||||||||    
T  5139448 aatcttatttaaaagattttgaaaagcttttccgaattcaccggtttgatgacgtacttcagatggatctac 5139519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 5077000 - 5077059
Alignment:
Q  183 ttgaaaggcttttccaaagtcaccggtttgatgtcgtacttgagatggatctacaccgta 242  Q
    |||||| | ||||||||| ||||| |||||||| ||||||| ||||||||||||||||||    
T  5077000 ttgaaacgattttccaaattcaccagtttgatgacgtacttcagatggatctacaccgta 5077059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 237
Target Start/End: Original strand, 5149594 - 5149673
Alignment:
Q  158 cctttgaaatcttattcaagagactttgaaaggcttttccaaagtcaccggtttgatgtcgtacttgagatggatctaca 237  Q
    ||||||||||  ||||||||||||||||||| ||||| ||||| ||||  ||||| || ||||||| | |||||||||||    
T  5149594 cctttgaaattctattcaagagactttgaaatgctttgccaaactcacttgtttggtgacgtacttcacatggatctaca 5149673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 5394637 - 5394577
Alignment:
Q  68 acctggaatttaaaactacaaatccagcaaggtcagctgcctcacgaagtgcgtctttcca 128  Q
    ||||| ||||||||||||||||||| |||||| | |||||| ||||||| || ||||||||    
T  5394637 acctgaaatttaaaactacaaatcctgcaaggcctgctgccacacgaagagcctctttcca 5394577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 275
Target Start/End: Original strand, 5184762 - 5184865
Alignment:
Q  172 ttcaagagactttgaaaggcttttccaaagtcaccggtttgatgtcgtacttgagatggatctacaccgtagaacaatggaagaacaatttgacctatag 271  Q
    ||||| ||||||||||| ||| ||||||| || || || ||||| ||||||| ||| || ||||||  |||||||| ||||| ||||| ||| ||||| |    
T  5184762 ttcaaaagactttgaaaagctattccaaactcgcctgtctgatgacgtacttcagaggggtctacatggtagaacactggaacaacaacttgtcctatgg 5184861  T
Q  272 ttct 275  Q
    ||||    
T  5184862 ttct 5184865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 33858334 - 33858287
Alignment:
Q  10 aaatgaaaagtttgtatgtttgtagggacaaaaaatatatttaaccct 57  Q
    |||||||||||| |||| ||| ||||||| ||||||||||||||||||    
T  33858334 aaatgaaaagttggtatatttatagggaccaaaaatatatttaaccct 33858287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 9373019 - 9372977
Alignment:
Q  15 aaaagtttgtatgtttgtagggacaaaaaatatatttaaccct 57  Q
    ||||||| |||| ||||||||||| ||||||||||||||||||    
T  9373019 aaaagttggtatatttgtagggactaaaaatatatttaaccct 9372977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 211616 - 211645
Alignment:
Q  30 tgtagggacaaaaaatatatttaaccctaa 59  Q
    ||||||||||||||||||||||||||||||    
T  211616 tgtagggacaaaaaatatatttaaccctaa 211645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 4606018 - 4606063
Alignment:
Q  14 gaaaagtttgtatgtttgtagggacaaaaaatatatttaaccctaa 59  Q
    ||||||||||||| ||| ||||||| ||||| ||||||||||||||    
T  4606018 gaaaagtttgtatatttatagggaccaaaaacatatttaaccctaa 4606063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 5174340 - 5174292
Alignment:
Q  173 tcaagagactttgaaaggcttttccaaagtcaccggtttgatgtcgtac 221  Q
    ||||||||||||| || ||||||||||| ||||| ||||| ||||||||    
T  5174340 tcaagagactttggaacgcttttccaaactcacctgtttggtgtcgtac 5174292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 5276086 - 5276038
Alignment:
Q  173 tcaagagactttgaaaggcttttccaaagtcaccggtttgatgtcgtac 221  Q
    ||||||||||||| || ||||||||||| ||||| ||||| ||||||||    
T  5276086 tcaagagactttggaacgcttttccaaactcacctgtttggtgtcgtac 5276038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 5692830 - 5692878
Alignment:
Q  173 tcaagagactttgaaaggcttttccaaagtcaccggtttgatgtcgtac 221  Q
    ||||||||||||| || ||||||||||| ||||| ||||| ||||||||    
T  5692830 tcaagagactttggaacgcttttccaaactcacctgtttggtgtcgtac 5692878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 44917525 - 44917476
Alignment:
Q  10 aaatgaaaagtttgtatgtttgtagggacaaaaaatatatttaaccctaa 59  Q
    |||||||||||| |||| ||| ||||||||||||| ||||||||||||||    
T  44917525 aaatgaaaagttggtatatttatagggacaaaaaacatatttaaccctaa 44917476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 26488248 - 26488289
Alignment:
Q  14 gaaaagtttgtatgtttgtagggacaaaaaatatatttaacc 55  Q
    ||||||||||||| ||||||||||| ||||| ||||||||||    
T  26488248 gaaaagtttgtatatttgtagggaccaaaaacatatttaacc 26488289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 27553062 - 27553013
Alignment:
Q  10 aaatgaaaagtttgtatgtttgtagggacaaaaaatatatttaaccctaa 59  Q
    |||||||||||| |||| ||| ||||||| ||||| ||||||||||||||    
T  27553062 aaatgaaaagttggtatatttatagggaccaaaaacatatttaaccctaa 27553013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 49459117 - 49459166
Alignment:
Q  10 aaatgaaaagtttgtatgtttgtagggacaaaaaatatatttaaccctaa 59  Q
    ||||||||||||| ||| ||||||||||  ||||| ||||||||||||||    
T  49459117 aaatgaaaagtttatatttttgtagggatcaaaaacatatttaaccctaa 49459166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 43201506 - 43201458
Alignment:
Q  10 aaatgaaaagtttgtatgtttgtagggacaaaaaatatatttaacccta 58  Q
    ||||||||||||  ||| ||| ||||||| |||||||||||||||||||    
T  43201506 aaatgaaaagttgatatatttatagggaccaaaaatatatttaacccta 43201458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 31311346 - 31311395
Alignment:
Q  10 aaatgaaaagtttgtatgtttgtagggacaaaaaatatatttaaccctaa 59  Q
    ||||||||||||||||| ||| ||||||| ||||| ||||||||||||||    
T  31311346 aaatgaaaagtttgtatatttatagggaccaaaaacatatttaaccctaa 31311395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 37169695 - 37169646
Alignment:
Q  10 aaatgaaaagtttgtatgtttgtagggacaaaaaatatatttaaccctaa 59  Q
    |||||||||||| |||| ||| ||||||| ||||||||||||||||||||    
T  37169695 aaatgaaaagttggtatatttatagggaccaaaaatatatttaaccctaa 37169646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 23551106 - 23551154
Alignment:
Q  10 aaatgaaaagtttgtatgtttgtagggacaaaaaatatatttaacccta 58  Q
    |||||||||||| |||| ||| ||||||| |||||||||||||||||||    
T  23551106 aaatgaaaagttggtatatttatagggaccaaaaatatatttaacccta 23551154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 4229367 - 4229320
Alignment:
Q  10 aaatgaaaagtttgtatgtttgtagggacaaaaaatatatttaaccct 57  Q
    ||||||||||||||||| ||| ||||||| ||||| ||||||||||||    
T  4229367 aaatgaaaagtttgtatatttatagggaccaaaaacatatttaaccct 4229320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 38472243 - 38472198
Alignment:
Q  14 gaaaagtttgtatgtttgtagggacaaaaaatatatttaaccctaa 59  Q
    |||||||| |||| ||| ||||||| ||||||||||||||||||||    
T  38472243 gaaaagttagtatatttatagggactaaaaatatatttaaccctaa 38472198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 52587122 - 52587073
Alignment:
Q  10 aaatgaaaagtttgtatgtttgtagggacaaaaaatatatttaaccctaa 59  Q
    ||||||||||||  ||| ||| ||||||| ||||||||||||||||||||    
T  52587122 aaatgaaaagttgatatatttatagggaccaaaaatatatttaaccctaa 52587073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 16202425 - 16202381
Alignment:
Q  14 gaaaagtttgtatgtttgtagggacaaaaaatatatttaacccta 58  Q
    |||||||| |||| ||| ||||||||||||| |||||||||||||    
T  16202425 gaaaagttggtatttttatagggacaaaaaacatatttaacccta 16202381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 42628817 - 42628773
Alignment:
Q  15 aaaagtttgtatgtttgtagggacaaaaaatatatttaaccctaa 59  Q
    ||||||| |||| ||| ||||||| ||||||||||||||||||||    
T  42628817 aaaagttggtatatttatagggaccaaaaatatatttaaccctaa 42628773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 46888222 - 46888270
Alignment:
Q  14 gaaaagtttgtatgtttgtagggacaaaaaatatatttaaccctaagtt 62  Q
    ||||||||  ||| ||| ||||||||||||| |||||||||||||||||    
T  46888222 gaaaagttgatatatttatagggacaaaaaacatatttaaccctaagtt 46888270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 36309279 - 36309326
Alignment:
Q  10 aaatgaaaagtttgtatgtttgtagggacaaaaaatatatttaaccct 57  Q
    ||||||||||||||||| ||| ||||||| ||||| ||||||||||||    
T  36309279 aaatgaaaagtttgtatatttatagggaccaaaaaaatatttaaccct 36309326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 736429 - 736474
Alignment:
Q  14 gaaaagtttgtatgtttgtagggacaaaaaatatatttaaccctaa 59  Q
    |||||||| |||| ||| |||||| |||||||||||||||||||||    
T  736429 gaaaagttggtatatttatagggagaaaaaatatatttaaccctaa 736474  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 1702914 - 1702959
Alignment:
Q  14 gaaaagtttgtatgtttgtagggacaaaaaatatatttaaccctaa 59  Q
    |||||||| |||| ||| ||||||| ||||||||||||||||||||    
T  1702914 gaaaagttggtatatttatagggaccaaaaatatatttaaccctaa 1702959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 2007209 - 2007258
Alignment:
Q  10 aaatgaaaagtttgtatgtttgtagggacaaaaaatatatttaaccctaa 59  Q
    ||||||||||||| ||| ||| ||||||| ||||| ||||||||||||||    
T  2007209 aaatgaaaagtttatatatttatagggaccaaaaacatatttaaccctaa 2007258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 21973973 - 21974018
Alignment:
Q  14 gaaaagtttgtatgtttgtagggacaaaaaatatatttaaccctaa 59  Q
    |||||||| |||| ||| ||||||| ||||||||||||||||||||    
T  21973973 gaaaagttagtatatttatagggaccaaaaatatatttaaccctaa 21974018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 30256077 - 30256122
Alignment:
Q  14 gaaaagtttgtatgtttgtagggacaaaaaatatatttaaccctaa 59  Q
    ||||||||||||| ||| ||||||| ||||| ||||||||||||||    
T  30256077 gaaaagtttgtatatttatagggaccaaaaacatatttaaccctaa 30256122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 6395276 - 6395228
Alignment:
Q  10 aaatgaaaagtttgtatgtttgtagggacaaaaaatatatttaacccta 58  Q
    |||||||||||| |||| ||||||||||| ||||| ||||| |||||||    
T  6395276 aaatgaaaagttggtatatttgtagggaccaaaaacatattcaacccta 6395228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 9327961 - 9327917
Alignment:
Q  14 gaaaagtttgtatgtttgtagggacaaaaaatatatttaacccta 58  Q
    |||||||| |||| ||| ||||||||||||| |||||||||||||    
T  9327961 gaaaagttggtatatttatagggacaaaaaacatatttaacccta 9327917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 24406942 - 24406986
Alignment:
Q  14 gaaaagtttgtatgtttgtagggacaaaaaatatatttaacccta 58  Q
    ||||||||||||| ||| ||||||| ||||| |||||||||||||    
T  24406942 gaaaagtttgtatatttatagggaccaaaaacatatttaacccta 24406986  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 12612130 - 12612177
Alignment:
Q  10 aaatgaaaagtttgtatgtttgtagggacaaaaaatatatttaaccct 57  Q
    |||||||||||| |||| ||| ||||||| ||||||||||||||||||    
T  12612130 aaatgaaaagttggtatatttatagggaccaaaaatatatttaaccct 12612177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 41245668 - 41245621
Alignment:
Q  10 aaatgaaaagtttgtatgtttgtagggacaaaaaatatatttaaccct 57  Q
    |||||||||||| |||| ||| ||||||||||||| ||||||||||||    
T  41245668 aaatgaaaagttggtatatttatagggacaaaaaacatatttaaccct 41245621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 27251653 - 27251607
Alignment:
Q  10 aaatgaaaagtttgtatgtttgtagggacaaaaaatatatttaaccc 56  Q
    |||||||||||| |||| ||||||||||| ||||| |||||||||||    
T  27251653 aaatgaaaagttcgtatatttgtagggaccaaaaacatatttaaccc 27251607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 42641371 - 42641425
Alignment:
Q  9 gaaatgaaaagtttgtatgtttgtagggacaaaaaatatatttaaccctaagttt 63  Q
    |||| |||||||| |||| ||| ||||||| ||||| ||||||||||||||||||    
T  42641371 gaaacgaaaagttagtatatttatagggaccaaaaacatatttaaccctaagttt 42641425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 4053167 - 4053118
Alignment:
Q  10 aaatgaaaagtttgtatgtttgtagggacaaaaaatatatttaaccctaa 59  Q
    |||||||||||| |||| ||| ||| ||| ||||||||||||||||||||    
T  4053167 aaatgaaaagttggtatatttatagagaccaaaaatatatttaaccctaa 4053118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 9135354 - 9135309
Alignment:
Q  14 gaaaagtttgtatgtttgtagggacaaaaaatatatttaaccctaa 59  Q
    |||||||| |||| ||| ||||||| ||||||||||||||||||||    
T  9135354 gaaaagttggtatatttatagggactaaaaatatatttaaccctaa 9135309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 11603009 - 11602960
Alignment:
Q  10 aaatgaaaagtttgtatgtttgtagggacaaaaaatatatttaaccctaa 59  Q
    |||||||||||| |||| ||| ||||||| || |||||||||||||||||    
T  11603009 aaatgaaaagttggtatatttttagggaccaataatatatttaaccctaa 11602960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 42788105 - 42788150
Alignment:
Q  14 gaaaagtttgtatgtttgtagggacaaaaaatatatttaaccctaa 59  Q
    ||||||||| ||| ||| ||||||| ||||||||||||||||||||    
T  42788105 gaaaagtttatatatttatagggactaaaaatatatttaaccctaa 42788150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 17952744 - 17952692
Alignment:
Q  5 gacagaaatgaaaagtttgtatgtttgtagggacaaaaaatatatttaaccct 57  Q
    |||| |||||||||||| |||| ||| ||||||| ||||| ||||||||||||    
T  17952744 gacaaaaatgaaaagttggtatatttatagggaccaaaaacatatttaaccct 17952692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 52107 - 52156
Alignment:
Q  10 aaatgaaaagtttgtatgtttgtagggacaaaaaatatatttaaccctaa 59  Q
    |||||||||||| |||| ||| ||||||| ||||| ||||||||||||||    
T  52107 aaatgaaaagttggtatatttatagggaccaaaaacatatttaaccctaa 52156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 12444282 - 12444237
Alignment:
Q  14 gaaaagtttgtatgtttgtagggacaaaaaatatatttaaccctaa 59  Q
    |||||||| |||| ||| ||||||| ||||||||||||||||||||    
T  12444282 gaaaagttggtatatttatagggaccaaaaatatatttaaccctaa 12444237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 13407986 - 13407941
Alignment:
Q  14 gaaaagtttgtatgtttgtagggacaaaaaatatatttaaccctaa 59  Q
    |||||||| |||| ||| ||||||| ||||||||||||||||||||    
T  13407986 gaaaagttggtatatttatagggaccaaaaatatatttaaccctaa 13407941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 5244747 - 5244795
Alignment:
Q  10 aaatgaaaagtttgtatgtttgtagggacaaaaaatatatttaacccta 58  Q
    |||||||||||| |||| ||| ||||||| ||||| |||||||||||||    
T  5244747 aaatgaaaagttggtatatttatagggaccaaaaacatatttaacccta 5244795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 28442671 - 28442707
Alignment:
Q  15 aaaagtttgtatgtttgtagggacaaaaaatatattt 51  Q
    |||||||||||| |||||| |||||||||||||||||    
T  28442671 aaaagtttgtatatttgtaaggacaaaaaatatattt 28442707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 10556054 - 10556103
Alignment:
Q  10 aaatgaaaagtttgtatgtttgtagggacaaaaaatatatttaaccctaa 59  Q
    |||||||||||| |||| ||| ||||||| ||||| ||||||||||||||    
T  10556054 aaatgaaaagttggtatatttatagggaccaaaaacatatttaaccctaa 10556103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 22888198 - 22888247
Alignment:
Q  10 aaatgaaaagtttgtatgtttgtagggacaaaaaatatatttaaccctaa 59  Q
    ||||||||||||||||| ||| ||| ||| ||||| ||||||||||||||    
T  22888198 aaatgaaaagtttgtatatttatagagaccaaaaacatatttaaccctaa 22888247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 28868052 - 28868007
Alignment:
Q  14 gaaaagtttgtatgtttgtagggacaaaaaatatatttaaccctaa 59  Q
    ||||||||||||| ||| ||||||| ||||| ||||||||||||||    
T  28868052 gaaaagtttgtatatttatagggaccaaaaacatatttaaccctaa 28868007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 46939666 - 46939711
Alignment:
Q  14 gaaaagtttgtatgtttgtagggacaaaaaatatatttaaccctaa 59  Q
    |||||||| |||| ||| ||||||| ||||||||||||||||||||    
T  46939666 gaaaagttggtatatttatagggaccaaaaatatatttaaccctaa 46939711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 12300795 - 12300839
Alignment:
Q  14 gaaaagtttgtatgtttgtagggacaaaaaatatatttaacccta 58  Q
    |||||||| |||| ||| ||||||| |||||||||||||||||||    
T  12300795 gaaaagttagtatatttatagggaccaaaaatatatttaacccta 12300839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 29823874 - 29823922
Alignment:
Q  10 aaatgaaaagtttgtatgtttgtagggacaaaaaatatatttaacccta 58  Q
    |||||||||||| |||| ||| ||||||| ||||| |||||||||||||    
T  29823874 aaatgaaaagttggtatatttatagggaccaaaaacatatttaacccta 29823922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 1410 - 1450
Alignment:
Q  14 gaaaagtttgtatgtttgtagggacaaaaaatatatttaac 54  Q
    |||||||| |||| ||||||||||||||||| |||||||||    
T  1410 gaaaagttggtatatttgtagggacaaaaaacatatttaac 1450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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