View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8810A_low_145 (Length: 281)
Name: NF8810A_low_145
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_145 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 11 - 279
Target Start/End: Original strand, 14609376 - 14609644
Alignment:
| Q |
11 |
gatgaaaatggaggtgatggtatgcatcaaggagtatttgattcttctgagaagccttggaagcctttgtgccgaaaaagatcagttccaaatggcatca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14609376 |
gatgaaaatggaggtgatggtatgcatcaaggagtatttgattcttctgagaagccttggaagcctttgtgccgaaaaagatcagttccaaatggcatca |
14609475 |
T |
|
| Q |
111 |
taagtccatataggttggttattatatatgcaatatgtaaatgttgtatataactaaaaataattactataggattaaatgtatatcttagcgatttagt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14609476 |
taagtccatataggttggttattatatatgcaatatgtaaatgttgtatataactaaaaataattactataggattaaatgtatatcttagcgatttagt |
14609575 |
T |
|
| Q |
211 |
tataattgcatctgattgtgcctatatttcattaatttgcaggttgcttattggtgttcgcttagtagt |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14609576 |
tataattgcatctgattgtgcctatatttcattaatttgcaggttgcttattggtgttcgcttagtagt |
14609644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 126
Target Start/End: Complemental strand, 14599110 - 14599023
Alignment:
| Q |
39 |
aaggagtatttgattcttctgagaagccttggaagcctttgtgccgaaaaagatcagttccaaatggcatcataagtccatataggtt |
126 |
Q |
| |
|
|||||||||||||| ||| ||||| ||||||||||||||||| ||| || | || |||||||||||||||||| |||||||||||| |
|
|
| T |
14599110 |
aaggagtatttgatggttccgagaaaccttggaagcctttgtgtagaagaacaccaattccaaatggcatcataactccatataggtt |
14599023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University