View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_146 (Length: 279)
Name: NF8810A_low_146
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_146 |
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| [»] chr3 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 17 - 279
Target Start/End: Original strand, 46239893 - 46240155
Alignment:
| Q |
17 |
ggacatcatggatgacatgaggacgaatcatgcagtgggtatcaccaaaggtagggcgtggaaagcaaaacagatagctcagaaaattgttgagggtgat |
116 |
Q |
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| T |
46239893 |
ggacatcatggatgacatgaggacgaatcatgcagtgggtatcaccaaaggtagggcgtggaaagctaaacagatagctcagaaaattgttgagggtgat |
46239992 |
T |
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| Q |
117 |
gctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaacagggtgagtatcactgttgataggccagatccag |
216 |
Q |
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| T |
46239993 |
gctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaatagtgtgagtatcaatgttgataggccagatccag |
46240092 |
T |
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| Q |
217 |
gattacaacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaa |
279 |
Q |
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| T |
46240093 |
gattacaacccaggtttggatctttttacttttgttttgatggttgcaaaaaagggtttacaa |
46240155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 25 - 271
Target Start/End: Original strand, 23541295 - 23541541
Alignment:
| Q |
25 |
tggatgacatgaggacgaatcatgcagtgggtatcaccaaaggtagggcgtggaaagcaaaacagatagctcagaaaattgttgagggtgatgctgattg |
124 |
Q |
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| T |
23541295 |
tggatgacatgaggacaaaccatgcagtgggtattacaatgggtagggcttggaaggcaaaacagattgctcagagtattgttgatggtgatgctgatag |
23541394 |
T |
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| Q |
125 |
tcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaacagggtgagtatcactgttgataggccagatccaggattacaa |
224 |
Q |
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| T |
23541395 |
gcaatatgccatgatttggaggtatgctgcagaacttaaaagggtgaatgctggaaataatgtgaagataaatgtggatagaccaaccccatcaatccaa |
23541494 |
T |
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| Q |
225 |
cccaggtttggatctttttacttttgttttgatggctgcaaaaaagg |
271 |
Q |
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| T |
23541495 |
cccaggtttggttctttctacttttgttttgatggctgtaagaaagg |
23541541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 279
Target Start/End: Complemental strand, 3437574 - 3437324
Alignment:
| Q |
17 |
ggacatcatggatgacatgaggacgaatcatgcagtgggtatcaccaaaggtagggcgtggaaagcaaaacagatagctcagaaaattgttgagggtgat |
116 |
Q |
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| T |
3437574 |
ggacatcatcgatgacatgaggacgaatcatgcagtgggta------------gggcgtggaaagcaaaacagatagctcagaaaattgttgagggtgat |
3437487 |
T |
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| Q |
117 |
gctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaacagggtgagtatcactgttgataggccagatccag |
216 |
Q |
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| T |
3437486 |
gctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaacagtgtgagtatcaatgttgataggccagatccag |
3437387 |
T |
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| Q |
217 |
gattacaacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaa |
279 |
Q |
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| T |
3437386 |
gattacaacccaggtttggatctttttacttttgttttgatggatgcaaaaaagggtttacaa |
3437324 |
T |
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