View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8810A_low_149 (Length: 278)
Name: NF8810A_low_149
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_149 |
 | |
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| [»] chr7 (3 HSPs) |
| |
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| [»] chr3 (3 HSPs) |
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| [»] scaffold0300 (1 HSPs) |
| | |
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| [»] scaffold0140 (1 HSPs) |
| | |
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| [»] scaffold0121 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 3437088 - 3437348
Alignment:
| Q |
18 |
gacatcacttaccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctg |
117 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3437088 |
gacaacacttaccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctg |
3437187 |
T |
|
| Q |
118 |
cactcagtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
3437188 |
cactcagtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagcagttgaccaccatactttgtctttagat |
3437287 |
T |
|
| Q |
218 |
gacagccatcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatc |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3437288 |
gacagccatcaaccccaataaatggcctacatccatttgtaaacccttttttgcatccatc |
3437348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 249
Target Start/End: Original strand, 14798952 - 14799077
Alignment:
| Q |
124 |
gtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagc |
223 |
Q |
| |
|
|||||||||| ||||| || | ||||||||| || |||||||| ||||| || ||||| | | | |||||| ||||| |||||||| || ||||| | |
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|
| T |
14798952 |
gtttcaacaacaccaaaagctaaaggaaagtattgatcatttggatctcttcctacagccaccaacaattgacctccatattttgtcttcaggtgacacc |
14799051 |
T |
|
| Q |
224 |
catcaaccccaataaatggcctacat |
249 |
Q |
| |
|
||||||| ||||||||||| |||||| |
|
|
| T |
14799052 |
catcaacaccaataaatggtctacat |
14799077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 249
Target Start/End: Original strand, 15245944 - 15246069
Alignment:
| Q |
124 |
gtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagc |
223 |
Q |
| |
|
|||||||||| ||||| || | ||||||||| || |||||||| ||||| || ||||| | | | |||||| ||||| |||||||| || ||||| | |
|
|
| T |
15245944 |
gtttcaacaacaccaaaagctaaaggaaagtattgatcatttggatctcttcctacagccaccaacaattgacctccatattttgtcttcaggtgacacc |
15246043 |
T |
|
| Q |
224 |
catcaaccccaataaatggcctacat |
249 |
Q |
| |
|
||||||| ||||||||||| |||||| |
|
|
| T |
15246044 |
catcaacaccaataaatggtctacat |
15246069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 26 - 278
Target Start/End: Complemental strand, 46240383 - 46240131
Alignment:
| Q |
26 |
ttaccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagt |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46240383 |
ttaccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagt |
46240284 |
T |
|
| Q |
126 |
ttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagcca |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
46240283 |
ttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagcagttgacccccatactttgtctttagatgacaacca |
46240184 |
T |
|
| Q |
226 |
tcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatc |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
46240183 |
tcaaccccaataaatggcctacatccatttgtaaacccttttttgcaaccatc |
46240131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 28 - 254
Target Start/End: Complemental strand, 23541775 - 23541549
Alignment:
| Q |
28 |
accttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagttt |
127 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| |||| | ||||||||||||| | | |||||||||||| ||||||||| |||| |||| |||| |
|
|
| T |
23541775 |
accttctgttgatctgatatgaagacatatctcctatcccttccaatgtcatccattaaaagctccatgaaccatttccagctttccctacactttgttt |
23541676 |
T |
|
| Q |
128 |
caacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatc |
227 |
Q |
| |
|
| || || |||||||| | ||||| || |||||||||||||| ||||||||| | || || ||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
23541675 |
ctactattccaaatgccaatggaaaatattggtcatttgggtccctaccaacaactattagaagttgacccccatactttgtctttaaatgacatccatc |
23541576 |
T |
|
| Q |
228 |
aaccccaataaatggcctacatccatt |
254 |
Q |
| |
|
||||||| |||||| ||||| ||||| |
|
|
| T |
23541575 |
taccccaacaaatggtctacacccatt |
23541549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 200
Target Start/End: Original strand, 30038134 - 30038307
Alignment:
| Q |
27 |
taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt |
126 |
Q |
| |
|
|||||| || |||||||||||||| |||||||| ||||||| || || || |||| |||||||| | ||||||| ||||| || || ||||||||||| |
|
|
| T |
30038134 |
taccttttgttgatctgatatgaacacatatctcttatcttcacctatatcttccatcagcaactgcgtgaaccatttccaagtttccttgcactcagtt |
30038233 |
T |
|
| Q |
127 |
tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgaccccc |
200 |
Q |
| |
|
||||| | ||||| || || ||||| |||||||||||||||||||| || |||||||| | ||||||||||| |
|
|
| T |
30038234 |
tcaactaccccaaaagctagtggaaaatactggtcatttgggtctcttcctacagcaatcaacagttgaccccc |
30038307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 27 - 203
Target Start/End: Complemental strand, 29878409 - 29878233
Alignment:
| Q |
27 |
taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt |
126 |
Q |
| |
|
|||||| || |||||||||||||| |||||||| ||||||| || || || |||| |||||||| |||||||| ||||| ||| || ||||||||||| |
|
|
| T |
29878409 |
taccttttgttgatctgatatgaacacatatctcttatcttgacctatatcttccatcagcaactgtatgaaccatttccaactttccttgcactcagtt |
29878310 |
T |
|
| Q |
127 |
tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccata |
203 |
Q |
| |
|
||||| | ||||| || || ||||| |||||||||||||||||||| || |||||||| | ||||| |||||||| |
|
|
| T |
29878309 |
tcaactaccccaaaagctagtggaaaatactggtcatttgggtctcttcctacagcaatcaacagttgccccccata |
29878233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 27 - 185
Target Start/End: Original strand, 3921199 - 3921357
Alignment:
| Q |
27 |
taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt |
126 |
Q |
| |
|
|||||| || |||||||||||||| |||||||| ||||||| || || || |||| |||||||| |||||||| ||||| ||| || ||||||||||| |
|
|
| T |
3921199 |
taccttttgttgatctgatatgaacacatatctcttatcttgacctatatcttccatcagcaactgtatgaaccatttccaactttccttgcactcagtt |
3921298 |
T |
|
| Q |
127 |
tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaat |
185 |
Q |
| |
|
||||| | ||||| || || ||||| |||||||||||||||||||| || |||||||| |
|
|
| T |
3921299 |
tcaactaccccaaaagctagtggaaaatactggtcatttgggtctcttcctacagcaat |
3921357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 203
Target Start/End: Complemental strand, 6869201 - 6869027
Alignment:
| Q |
27 |
taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt |
126 |
Q |
| |
|
|||||| || |||||||||||||| |||| |||| ||||| || || || |||| |||||||| ||||||||| ||||| ||| || ||||||||||| |
|
|
| T |
6869201 |
taccttttgttgatctgatatgaacacatctctt--atcttgacctatatcttccatcagcaactgcatgaaccatttccaactttccttgcactcagtt |
6869104 |
T |
|
| Q |
127 |
tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccata |
203 |
Q |
| |
|
||||| | ||||| || || |||||||||||||||||||||||||| || |||||||| | ||||| |||||||| |
|
|
| T |
6869103 |
tcaactaccccaaaagctagtggaaagtactggtcatttgggtctctccctacagcaatcaacagttggcccccata |
6869027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 27 - 182
Target Start/End: Original strand, 4497222 - 4497377
Alignment:
| Q |
27 |
taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt |
126 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||| || || ||||||| || || || |||||| ||||| |||||||||||| | | ||| | |
|
|
| T |
4497222 |
taccttctgttgatctgatatgaagacatatcttttatcatttcctatgtcattcatcaacagctccataaaccatttccagcttgccttactttcaact |
4497321 |
T |
|
| Q |
127 |
tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagc |
182 |
Q |
| |
|
||||||| ||||| || || ||||| ||||||||||| ||||| || |||||||| |
|
|
| T |
4497322 |
tcaacaacaccaaaggccagtggaaaatactggtcattggggtcccttccaacagc |
4497377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 249
Target Start/End: Original strand, 11318291 - 11318404
Alignment:
| Q |
136 |
ccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaa |
235 |
Q |
| |
|
|||||||| | |||||| || || |||||||||||||| |||| ||||| || ||||| || ||||| | |||||||||||||| |||||||| || | |
|
|
| T |
11318291 |
ccaaatgctaaaggaaaatattgatcatttgggtctcttgcaactgcaataagaagttgtcctccatatctagtctttagatgacaaccatcaacaccga |
11318390 |
T |
|
| Q |
236 |
taaatggcctacat |
249 |
Q |
| |
|
|||| || |||||| |
|
|
| T |
11318391 |
taaaaggtctacat |
11318404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0300 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0300
Description:
Target: scaffold0300; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 182
Target Start/End: Complemental strand, 18289 - 18134
Alignment:
| Q |
27 |
taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt |
126 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| || || || ||||||| || || || |||||| ||||| |||||||||||| | | || | |
|
|
| T |
18289 |
taccttctgttgatctgatatgaagacatatcttttgtcatttcctatgtcattcatcaacagctccataaaccatttccagcttgccttactttctact |
18190 |
T |
|
| Q |
127 |
tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagc |
182 |
Q |
| |
|
||||||| ||||| || || ||||| ||||||||||| ||||| || |||||||| |
|
|
| T |
18189 |
tcaacaacaccaaaggccaggggaaaatactggtcattggggtcccttccaacagc |
18134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 182
Target Start/End: Original strand, 24676042 - 24676197
Alignment:
| Q |
27 |
taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt |
126 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| || || || ||||||| || || || |||||| ||||| |||||||||||| | | || | |
|
|
| T |
24676042 |
taccttctgttgatctgatatgaagacatatcttttgtcatttcctatgtcattcatcaacagctccataaaccatttccagcttgccttactttctact |
24676141 |
T |
|
| Q |
127 |
tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagc |
182 |
Q |
| |
|
||||||| ||||| || || ||||| ||||||||||| ||||| || |||||||| |
|
|
| T |
24676142 |
tcaacaacaccaaaggccagtggaaaatactggtcattggggtcccttccaacagc |
24676197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 248
Target Start/End: Original strand, 40053 - 40153
Alignment:
| Q |
148 |
ggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaataaatggcctac |
247 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||| | || ||| |||||||| ||||| |||||||| |||||||| || ||||| ||||||| |
|
|
| T |
40053 |
ggaaaatactggtcatttgggtctctaccaacaacaattaaaagagtacctccatacttggtcttaagatgacacccatcaactcctataaagggcctac |
40152 |
T |
|
| Q |
248 |
a |
248 |
Q |
| |
|
| |
|
|
| T |
40153 |
a |
40153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 130
Target Start/End: Complemental strand, 36915439 - 36915336
Alignment:
| Q |
27 |
taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt |
126 |
Q |
| |
|
|||||| || |||||||||||||| |||||||| ||||||| || || || |||| ||||||| ||||||||| ||||| ||| || ||||||||||| |
|
|
| T |
36915439 |
taccttttgttgatctgatatgaacacatatctcttatcttgacctatatcttccattagcaactgcatgaaccatttccaactttccttgcactcagtt |
36915340 |
T |
|
| Q |
127 |
tcaa |
130 |
Q |
| |
|
|||| |
|
|
| T |
36915339 |
tcaa |
36915336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 249
Target Start/End: Complemental strand, 43607 - 43494
Alignment:
| Q |
136 |
ccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaa |
235 |
Q |
| |
|
|||||||| | |||||| || || ||||||||| |||| ||||| ||||| || ||||| || ||||| | |||||||||||||| |||||||| || | |
|
|
| T |
43607 |
ccaaatgctaaaggaaaatattgatcatttgggcctcttccaactgcaataagaagttgtcctccatatctagtctttagatgacaaccatcaacaccga |
43508 |
T |
|
| Q |
236 |
taaatggcctacat |
249 |
Q |
| |
|
|||| || |||||| |
|
|
| T |
43507 |
taaaaggtctacat |
43494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 249
Target Start/End: Original strand, 18131561 - 18131674
Alignment:
| Q |
136 |
ccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaa |
235 |
Q |
| |
|
|||||||| | |||||| || || ||||||||| |||| ||||| ||||| || ||||| || ||||| | |||||||||||||| |||||||| || | |
|
|
| T |
18131561 |
ccaaatgctaaaggaaaatattgatcatttgggcctcttccaactgcaataagaagttgtcctccatatctagtctttagatgacaaccatcaacaccga |
18131660 |
T |
|
| Q |
236 |
taaatggcctacat |
249 |
Q |
| |
|
|||| || |||||| |
|
|
| T |
18131661 |
taaaaggtctacat |
18131674 |
T |
|
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