View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_15 (Length: 463)
Name: NF8810A_low_15
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 13 - 364
Target Start/End: Complemental strand, 37169408 - 37169057
Alignment:
| Q |
13 |
atggacatcaaataattatagggnnnnnnngaaaggataggatgaagcgtgaggtgcaggattatggaggatgaccatacattgaaattatttaacacat |
112 |
Q |
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| T |
37169408 |
atggacatcaaataattatagggaaaaaatgaaaggataggatgaagcgtgaggtgcaggattatggaggatgacaatacattgaaattatttaacacat |
37169309 |
T |
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| Q |
113 |
ggacttatgtttgcaaagaaaagctcaataactccacaggttcgagtattatgtagcatcttcttccactgtttgcttcccaggcgtgatcaactatgtc |
212 |
Q |
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| T |
37169308 |
ggacttatgtttgcaaagaaaagctcaataactccacaggttcgagtattatgtagcatcttcttccactgtttgcttcccaggcgtgatcaactatgtc |
37169209 |
T |
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| Q |
213 |
tattcgtgcatggccgcacaagtggcacgttttgacaggaccactgtagatacaatgacataacagaaattggtttgagaccagaatgggtgttggaaat |
312 |
Q |
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| T |
37169208 |
tattcgtgcatggccgcacaagtggcacgttttgacaggatcactgtagatacaatgacataacagaaattggtttgagatcagaatgggtgttggaaat |
37169109 |
T |
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| Q |
313 |
agaaagttggattatggatgagggaggtttctggtggtgcgggtgatgaatg |
364 |
Q |
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| T |
37169108 |
ggaaagttggattatggatgagggaggtttctggtggtgcgggtgatgaatg |
37169057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 364 - 454
Target Start/End: Complemental strand, 37168985 - 37168895
Alignment:
| Q |
364 |
gttaagatcatttaactatattaaacttgatgtgtaatttggaccgtcttttctacaacaacaaatcaaaatcctatatgtgtatattgtt |
454 |
Q |
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| T |
37168985 |
gttaagatcatttaactatattaaacttgatgtgtaatttggaccgtcttttctacaacaacaaatcaaaatcctatatgtgtatattgtt |
37168895 |
T |
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