View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8810A_low_152 (Length: 273)

Name: NF8810A_low_152
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8810A_low_152
NF8810A_low_152
[»] chr8 (9 HSPs)
chr8 (20-271)||(32166640-32166890)
chr8 (83-271)||(33897618-33897807)
chr8 (91-271)||(35574645-35574827)
chr8 (90-178)||(29969153-29969241)
chr8 (221-273)||(12736074-12736126)
chr8 (126-176)||(6803876-6803926)
chr8 (212-273)||(6630542-6630603)
chr8 (85-176)||(6630316-6630406)
chr8 (233-273)||(29969129-29969169)
[»] chr7 (18 HSPs)
chr7 (83-273)||(34891414-34891605)
chr7 (83-273)||(3191570-3191760)
chr7 (91-273)||(42012690-42012872)
chr7 (91-253)||(31171316-31171480)
chr7 (201-271)||(32138891-32138961)
chr7 (91-269)||(31152738-31152919)
chr7 (212-269)||(32962398-32962455)
chr7 (221-273)||(23944096-23944148)
chr7 (216-273)||(34891380-34891437)
chr7 (129-248)||(22593597-22593722)
chr7 (98-256)||(8900670-8900831)
chr7 (85-176)||(33362347-33362436)
chr7 (217-255)||(7463864-7463902)
chr7 (223-273)||(33362415-33362465)
chr7 (224-273)||(8354395-8354444)
chr7 (201-237)||(27651379-27651415)
chr7 (221-273)||(27651513-27651564)
chr7 (201-253)||(29152350-29152402)
[»] chr5 (17 HSPs)
chr5 (90-273)||(7113617-7113804)
chr5 (92-273)||(40483739-40483922)
chr5 (204-273)||(2243319-2243388)
chr5 (201-273)||(973111-973183)
chr5 (90-178)||(2243249-2243335)
chr5 (204-271)||(14138548-14138615)
chr5 (77-178)||(17739908-17740009)
chr5 (217-255)||(972845-972883)
chr5 (201-250)||(7215322-7215371)
chr5 (77-177)||(7215230-7215329)
chr5 (201-273)||(17736757-17736829)
chr5 (212-256)||(37077663-37077707)
chr5 (72-187)||(39730369-39730484)
chr5 (217-269)||(39808239-39808291)
chr5 (221-270)||(39730312-39730361)
chr5 (221-273)||(22780347-22780399)
chr5 (201-273)||(37077760-37077832)
[»] chr2 (16 HSPs)
chr2 (83-269)||(13712757-13712945)
chr2 (91-269)||(9050132-9050313)
chr2 (201-273)||(16576248-16576320)
chr2 (204-273)||(16863459-16863528)
chr2 (91-253)||(38576791-38576955)
chr2 (123-180)||(38576707-38576764)
chr2 (223-271)||(2909844-2909892)
chr2 (77-270)||(16576290-16576486)
chr2 (91-161)||(9931337-9931406)
chr2 (212-273)||(38576940-38577001)
chr2 (91-175)||(25606423-25606506)
chr2 (212-255)||(34176654-34176697)
chr2 (205-271)||(35370402-35370468)
chr2 (83-176)||(28282699-28282791)
chr2 (201-269)||(25606366-25606434)
chr2 (201-253)||(28282824-28282876)
[»] chr4 (12 HSPs)
chr4 (83-259)||(25234217-25234393)
chr4 (77-255)||(25062361-25062544)
chr4 (156-273)||(15131578-15131698)
chr4 (127-273)||(54000050-54000199)
chr4 (207-270)||(4115389-4115452)
chr4 (212-271)||(20512832-20512891)
chr4 (200-273)||(22050851-22050924)
chr4 (83-176)||(55897600-55897693)
chr4 (217-273)||(54000219-54000275)
chr4 (222-273)||(25062340-25062391)
chr4 (212-273)||(11020084-11020144)
chr4 (85-178)||(22050903-22050995)
[»] chr3 (11 HSPs)
chr3 (115-270)||(39341110-39341268)
chr3 (118-273)||(42091794-42091951)
chr3 (202-273)||(46303371-46303442)
chr3 (77-178)||(54437848-54437949)
chr3 (200-257)||(31758242-31758298)
chr3 (119-176)||(39341283-39341340)
chr3 (201-273)||(34761956-34762028)
chr3 (201-255)||(54437806-54437860)
chr3 (212-269)||(48646423-48646479)
chr3 (221-273)||(20519299-20519351)
chr3 (215-271)||(54437651-54437707)
[»] chr6 (10 HSPs)
chr6 (119-271)||(20068000-20068155)
chr6 (201-270)||(32342600-32342669)
chr6 (170-269)||(23577118-23577219)
chr6 (221-269)||(32047194-32047242)
chr6 (204-250)||(20206481-20206527)
chr6 (204-250)||(22100504-22100550)
chr6 (123-178)||(32047262-32047317)
chr6 (94-148)||(23577068-23577121)
chr6 (129-175)||(26236751-26236797)
chr6 (202-263)||(23577009-23577070)
[»] chr1 (21 HSPs)
chr1 (201-271)||(46080971-46081041)
chr1 (201-269)||(10775163-10775231)
chr1 (201-273)||(34601444-34601516)
chr1 (154-271)||(7997194-7997314)
chr1 (164-253)||(44342055-44342145)
chr1 (85-178)||(3232179-3232271)
chr1 (85-170)||(7104316-7104400)
chr1 (201-273)||(24873765-24873838)
chr1 (201-273)||(24874598-24874671)
chr1 (201-254)||(42819621-42819674)
chr1 (212-273)||(52432672-52432733)
chr1 (201-273)||(12144970-12145039)
chr1 (74-163)||(49897909-49897998)
chr1 (90-163)||(67982-68054)
chr1 (201-273)||(68097-68169)
chr1 (77-136)||(68139-68198)
chr1 (201-273)||(49897870-49897942)
chr1 (222-273)||(3231979-3232030)
chr1 (222-273)||(38839664-38839715)
chr1 (212-273)||(10775028-10775089)
chr1 (225-273)||(3367806-3367854)
[»] scaffold0136 (1 HSPs)
scaffold0136 (217-273)||(36976-37033)
[»] scaffold1743 (1 HSPs)
scaffold1743 (212-271)||(794-853)
[»] scaffold0047 (1 HSPs)
scaffold0047 (212-259)||(62744-62791)


Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 20 - 271
Target Start/End: Complemental strand, 32166890 - 32166640
Alignment:
Q  20 caatatatgaatgtggttttttcttacatagctgcttccaatcaaagtgtttcttcgaacttcttatcttcttcatttaacatgtgatttacatctcttt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32166890 caatatatgaatgtggttttttcttacatagctgcttccaatcaaagtgtttcttcgaatttcttatcttcttcatttaacatgtgatttacatctcttt 32166791  T
Q  120 tcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatgctcatcgatagtttttcttactatcaatta 219  Q
     |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32166790 -cgttccaaaatcgaatcgtacttgtcattagaggtaaattacacccaattcatcaaagaaaaatgtatgctcatcgatagtttttcttactatcaatta 32166692  T
Q  220 tcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 271  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32166691 tcattttcatctcaagaacatcaaacttcttcatctcctttattcaacatgt 32166640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 83 - 271
Target Start/End: Original strand, 33897618 - 33897807
Alignment:
Q  83 ttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaa 182  Q
    |||||| |||||||||||||||||||||||||| ||||||||| |||||| ||||||  || |||| ||| ||||||||| | ||||| |||||||||||    
T  33897618 ttatctccttcatttaacatgtgatttacatct-ttttcgttctaaaatctaatcgtgtttatcatcagatgtaaattactctcaattaatcaaggaaaa 33897716  T
Q  183 atgtatgctcatcgata-gtttttc-ttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 271  Q
    ||||| |||| ||||||  |||||| |||||||||||||  |||||||||| || ||||||||| ||||| || ||||| |||||||||||    
T  33897717 atgtaggctcgtcgatatatttttctttactatcaattactattttcatctcaaaaacatcaaaattcttaatttccttcattcaacatgt 33897807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 91 - 271
Target Start/End: Complemental strand, 35574827 - 35574645
Alignment:
Q  91 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgta-tg 189  Q
    |||||| ||||| ||||||  |||||||| ||||||||||||||||| || |||||||||| |||||||||||| ||||||||||| ||| |||| |       
T  35574827 ttcattgaacatatgattttaatctcttt-cgttccaaaatcgaatcatagttgtcattagcggtaaattaccctcaattcatcaatgaataatggagac 35574729  T
Q  190 ctcatcgata--gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 271  Q
    ||||| ||||  ||||||||||| || | |||  ||||||||||||||||||||||| || |||||||| || |||||||||||    
T  35574728 ctcattgatagggtttttcttacaattagttacgattttcatcttaagaacatcaaattttttcatctcattcattcaacatgt 35574645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 29969153 - 29969241
Alignment:
Q  90 cttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcatt-agaggtaaattacccccaattcatcaagg 178  Q
    ||||||| |||||||||| | ||||||||| ||||||| ||||||||  ||||||||||| || ||||||||| || |||||||||||||    
T  29969153 cttcattcaacatgtgatattcatctcttt-cgttccataatcgaattctacttgtcattaaggggtaaattatccacaattcatcaagg 29969241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 221 - 273
Target Start/End: Original strand, 12736074 - 12736126
Alignment:
Q  221 cattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 273  Q
    ||||| |||||||| ||||||||||||||||||||||||  ||||||||||||    
T  12736074 catttccatcttaataacatcaaacttcttcatctccttcgttcaacatgtga 12736126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 6803926 - 6803876
Alignment:
Q  126 caaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa 176  Q
    ||||||| |||| ||||||||||||| |||||||||| |||||||||||||    
T  6803926 caaaatcaaatcctacttgtcattaggggtaaattactcccaattcatcaa 6803876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 6630603 - 6630542
Alignment:
Q  212 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 273  Q
    |||||||| |||||||||||||||| ||| ||| |||||||||||||| ||| |||| ||||    
T  6630603 atcaattaccattttcatcttaagatcattaaatttcttcatctccttcatttaacaagtga 6630542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 176
Target Start/End: Complemental strand, 6630406 - 6630316
Alignment:
Q  85 atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa 176  Q
    ||||| |||||| |||||||| | | |||||| || | || ||||||| |||| ||||||||||||| |||||||||| | |||||||||||    
T  6630406 atctttttcattcaacatgtgttatccatctcctt-catttcaaaatcaaatcctacttgtcattaggggtaaattactctcaattcatcaa 6630316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 29969129 - 29969169
Alignment:
Q  233 aagaacatcaaacttcttcatctcctttattcaacatgtga 273  Q
    ||||||||||||||||||| || |||| |||||||||||||    
T  29969129 aagaacatcaaacttcttcttccccttcattcaacatgtga 29969169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 6e-40; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 83 - 273
Target Start/End: Original strand, 34891414 - 34891605
Alignment:
Q  83 ttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaa 182  Q
    ||||||||||||||||||||||||| || |||||||| | |||| ||||||||| ||| ||||||| || ||||||||||||| | |||||||||||| |    
T  34891414 ttatcttcttcatttaacatgtgatctagatctcttt-cattcccaaatcgaattgtatttgtcatgaggggtaaattacccc-agttcatcaaggaaga 34891511  T
Q  183 atgtatgctcatcgatag---tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 273  Q
    || || ||||| |||||    ||||||||||||| | |||||||||| |||| |||||||||||| |||||||||||||| |||||||||||||    
T  34891512 atataggctcaccgatatggttttttcttactattagttatcattttgatctcaagaacatcaaatttcttcatctccttcattcaacatgtga 34891605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 83 - 273
Target Start/End: Complemental strand, 3191760 - 3191570
Alignment:
Q  83 ttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaa 182  Q
    |||||| |||||||||| |||||||||||||| |||| | || |||||| |||||||| ||| ||| |  ||||||||||| ||||| |||  |||||||    
T  3191760 ttatctccttcatttaagatgtgatttacatcccttt-catttcaaaattgaatcgtatttgacatgaagggtaaattaccgccaatacatggaggaaaa 3191662  T
Q  183 atgtatgctcatcgatagtttt-tcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 273  Q
    |||||  ||||   ||  |||| | ||||||||| ||||  ||||||||| || ||||||||| ||||||||||||||||||||||||||||    
T  3191661 atgtagactcacatatgattttcttttactatcagttattcttttcatctcaaaaacatcaaagttcttcatctcctttattcaacatgtga 3191570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 91 - 273
Target Start/End: Original strand, 42012690 - 42012872
Alignment:
Q  91 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatgc 190  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||| ||  |||||| || | ||||||| |||||||| |||||||||||||||| |     
T  42012690 ttcatttaagatgtgatttacatct-ttttcgttccaaaatcgaatcatatatgtcatgagggataaatta-ccccaattaatcaaggaaaaatgtaagt 42012787  T
Q  191 tcatcgata---gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 273  Q
    ||||| |||    |||||||||  |||| ||| || ||| |||  ||||||||||||||| |||||||  ||||||||||||||||    
T  42012788 tcatcaatatggttttttcttagaatcagttaccacttttatcacaagaacatcaaactttttcatct-atttattcaacatgtga 42012872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 91 - 253
Target Start/End: Complemental strand, 31171480 - 31171316
Alignment:
Q  91 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatgc 190  Q
    |||||| || ||||||||| ||||||||| |||| || ||||||||| ||||||| |||| ||||||||||||||||||||||||||  | ||||||  |    
T  31171480 ttcattcaaaatgtgatttccatctcttt-cgtttcataatcgaatcctacttgttattataggtaaattacccccaattcatcaagtgataatgtagac 31171382  T
Q  191 -tcatc--gatagtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcat 253  Q
     |||||    | ||||||||||| | |||||| |||||||||||||| |||||||| |||||||||    
T  31171381 ttcatcattttggtttttcttacaaccaattaccattttcatcttaaaaacatcaatcttcttcat 31171316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 201 - 271
Target Start/End: Complemental strand, 32138961 - 32138891
Alignment:
Q  201 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 271  Q
    |||||||||  |||||||| |||||||||||||||||||||||| ||||||||||||||  ||||||||||    
T  32138961 tttttcttaaaatcaattaccattttcatcttaagaacatcaaaattcttcatctccttcgttcaacatgt 32138891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 269
Target Start/End: Complemental strand, 31152919 - 31152738
Alignment:
Q  91 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatgc 190  Q
    |||||| || ||||||| | ||||||||| |||| || ||||||||| ||||||| |||| ||||||||||||||||||||||||||  | ||||||  |    
T  31152919 ttcattcaaaatgtgatctccatctcttt-cgtttcataatcgaatcctacttgttattataggtaaattacccccaattcatcaagtgataatgtagac 31152821  T
Q  191 -tcatcgat---agtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacat 269  Q
     |||||  |     |||||| ||| | |||||| |||||||||||||| |||||||| ||||||||| || || |||||||||    
T  31152820 ttcatcattttggttttttcatacaaccaattaccattttcatcttaaaaacatcaatcttcttcatttctttcattcaacat 31152738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 212 - 269
Target Start/End: Complemental strand, 32962455 - 32962398
Alignment:
Q  212 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacat 269  Q
    |||||||||||| ||||| ||||||| ||||||||| |||||||||||||||||||||    
T  32962455 atcaattatcatattcattttaagaaaatcaaactttttcatctcctttattcaacat 32962398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 221 - 273
Target Start/End: Original strand, 23944096 - 23944148
Alignment:
Q  221 cattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 273  Q
    ||||||||||||||||||||||||||||||| |||| || |||||||||||||    
T  23944096 cattttcatcttaagaacatcaaacttcttcttctctttcattcaacatgtga 23944148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 34891380 - 34891437
Alignment:
Q  216 attatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 273  Q
    |||||||||||||| |||||||||||||||||||| |||| ||| ||| |||||||||    
T  34891380 attatcattttcatattaagaacatcaaacttctttatcttcttcatttaacatgtga 34891437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 248
Target Start/End: Complemental strand, 22593722 - 22593597
Alignment:
Q  129 aatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatg-ctcatcgatag-----tttttctt-actatcaattatc 221  Q
    |||||||||||| |||||||||| ||||||||||| ||||||||| || |   |||||| | ||||||||||      |||||||| || ||||||| ||    
T  22593722 aatcgaatcgtaattgtcattag-ggtaaattacctccaattcattaatgggtaatgtaggtctcatcgataagattttttttctttacaatcaattgtc 22593624  T
Q  222 attttcatcttaagaacatcaaacttc 248  Q
    |||||||||| ||||||||||||||||    
T  22593623 attttcatctcaagaacatcaaacttc 22593597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 256
Target Start/End: Complemental strand, 8900831 - 8900670
Alignment:
Q  98 aacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatgct----ca 193  Q
    |||||||||| ||||| | |||| ||| || ||||||||  ||||||| ||||| | ||||||||||| |||||||||| | | |||||| |||    ||    
T  8900831 aacatgtgatctacatttttttttgtttcataatcgaattctacttgttattagggataaattacccc-aattcatcaatggataatgtaggcttcaaca 8900733  T
Q  194 tcgatagtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctc 256  Q
    |   |  |||||||||| || ||||| |||||| |||| ||||||| ||||||||||||||||    
T  8900732 tttttgttttttcttacaataaattaccatttttatctcaagaacaacaaacttcttcatctc 8900670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 176
Target Start/End: Complemental strand, 33362436 - 33362347
Alignment:
Q  85 atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa 176  Q
    |||| ||||||| ||||||||||||||| ||||||| |||| ||||||||||| || ||  ||||||| |||| ||||||| || |||||||    
T  33362436 atctccttcattcaacatgtgatttacaactctttt-gttctaaaatcgaatcatatttaccattaga-gtaacttacccctaactcatcaa 33362347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 255
Target Start/End: Original strand, 7463864 - 7463902
Alignment:
Q  217 ttatcattttcatcttaagaacatcaaacttcttcatct 255  Q
    ||||||||||||| | |||||||||||||||||||||||    
T  7463864 ttatcattttcatttgaagaacatcaaacttcttcatct 7463902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 273
Target Start/End: Complemental strand, 33362465 - 33362415
Alignment:
Q  223 ttttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 273  Q
    ||||||| || |||||||||||||| || |||||||| |||||||||||||    
T  33362465 ttttcattttcagaacatcaaactttttaatctccttcattcaacatgtga 33362415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 273
Target Start/End: Complemental strand, 8354444 - 8354395
Alignment:
Q  224 tttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 273  Q
    |||||||| |||||||| |||||||| ||| ||||| |||||||||||||    
T  8354444 tttcatctcaagaacattaaacttctacatatccttcattcaacatgtga 8354395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 27651415 - 27651379
Alignment:
Q  201 tttttcttactatcaattatcattttcatcttaagaa 237  Q
    |||||||||| |||||||||||||||||||| |||||    
T  27651415 tttttcttacaatcaattatcattttcatctcaagaa 27651379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 273
Target Start/End: Complemental strand, 27651564 - 27651513
Alignment:
Q  221 cattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 273  Q
    ||||||||||| |||||||||||||  | |||||||||| |||||||||||||    
T  27651564 cattttcatctcaagaacatcaaacaac-tcatctccttcattcaacatgtga 27651513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 29152402 - 29152350
Alignment:
Q  201 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcat 253  Q
    |||||||||| |||| |||  |||||||||| || ||||||||||||||||||    
T  29152402 tttttcttacaatcagttactattttcatctcaataacatcaaacttcttcat 29152350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 90 - 273
Target Start/End: Complemental strand, 7113804 - 7113617
Alignment:
Q  90 cttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccc-caattcatcaaggaaaaatgtat 188  Q
    |||||||||| |||||||||||||||||||| |||||| ||| |||||||| ||| ||| || ||||||||||||| ||||||||||||||||||||||     
T  7113804 cttcatttaagatgtgatttacatctctttt-gttccataattgaatcgtatttgacatcagcggtaaattacccctcaattcatcaaggaaaaatgtag 7113706  T
Q  189 gctcatcg--atag--tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 273  Q
    | || |||  ||||  ||||| |||| |||||||||||||||||||| ||||| || ||||||||||||||| || ||||||| |||||    
T  7113705 gttcgtcggtatagtattttttttaccatcaattatcattttcatctcaagaatattaaacttcttcatctcattcattcaacgtgtga 7113617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 92 - 273
Target Start/End: Original strand, 40483739 - 40483922
Alignment:
Q  92 tcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatg-c 190  Q
    ||||| |||||||||| | |||||| || ||||||||||||||||| ||||| ||||| | ||||| |||||| ||||||||||||  | ||  || | |    
T  40483739 tcattcaacatgtgatcttcatctcatt-cgttccaaaatcgaatcatacttatcattgggggtaatttaccctcaattcatcaagagataacataggcc 40483837  T
Q  191 tcatcgatag--tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 273  Q
    ||||||||||  |||||| ||| |||||||  ||  || || | ||||||||| ||||||||||||| ||||| |||||||||||    
T  40483838 tcatcgataggttttttcgtacaatcaattcccaaatttatatcaagaacatccaacttcttcatcttctttactcaacatgtga 40483922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 204 - 273
Target Start/End: Complemental strand, 2243388 - 2243319
Alignment:
Q  204 ttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 273  Q
    ||||||| || | ||| ||||||||||| ||||||||||||||||||||| ||||| |||||||||||||    
T  2243388 ttcttacaattagttaccattttcatctcaagaacatcaaacttcttcatatccttcattcaacatgtga 2243319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 973111 - 973183
Alignment:
Q  201 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 273  Q
    |||||||||| || | |||||||||| |||| || ||||| ||| ||||||||||||||||||||||||||||    
T  973111 tttttcttacaattagttatcatttttatctcaaaaacattaaatttcttcatctcctttattcaacatgtga 973183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 90 - 178
Target Start/End: Complemental strand, 2243335 - 2243249
Alignment:
Q  90 cttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaagg 178  Q
    ||||||| |||||||||| | ||||| | ||||||| | ||||||||  ||||||||||||||||||||||| ||||||||||||||||    
T  2243335 cttcattcaacatgtgatctccatct-tcttcgttctagaatcgaattttacttgtcattagaggtaaatta-ccccaattcatcaagg 2243249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 271
Target Start/End: Original strand, 14138548 - 14138615
Alignment:
Q  204 ttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 271  Q
    ||||||| |||||||| ||||||||||||||||| |||||||||  ||||||| || |||||||||||    
T  14138548 ttcttacaatcaattaccattttcatcttaagaatatcaaactttctcatctctttcattcaacatgt 14138615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 178
Target Start/End: Original strand, 17739908 - 17740009
Alignment:
Q  77 aacttctt-atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatca 175  Q
    |||||||| ||||||||||||||||||||||||| ||||||  ||||||||| ||||||||| ||||| | ||||| | | |||| | | ||||||||||    
T  17739908 aacttcttcatcttcttcatttaacatgtgattttcatctc-cttcgttccagaatcgaatcctacttattattagggatgaatttcactcaattcatca 17740006  T
Q  176 agg 178  Q
    |||    
T  17740007 agg 17740009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 255
Target Start/End: Original strand, 972845 - 972883
Alignment:
Q  217 ttatcattttcatcttaagaacatcaaacttcttcatct 255  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  972845 ttatcattttcatctcaagaacatcaaacttcttcatct 972883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 250
Target Start/End: Complemental strand, 7215371 - 7215322
Alignment:
Q  201 tttttcttactatcaattatcattttcatcttaagaacatcaaacttctt 250  Q
    |||||||||| ||||| || ||||||||||| ||||||||||||||||||    
T  7215371 tttttcttacaatcaactaccattttcatctcaagaacatcaaacttctt 7215322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 177
Target Start/End: Complemental strand, 7215329 - 7215230
Alignment:
Q  77 aacttcttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa 176  Q
    |||||||| ||||||||||| || ||||||| | ||||| ||||| ||| ||||| ||||| || || ||||||  ||||||||||||| |||||| |||    
T  7215329 aacttcttttcttcttcattgaatatgtgatctccatct-ttttcattctaaaattgaatcatatttatcattaacggtaaattaccccgaattcaacaa 7215231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 273
Target Start/End: Complemental strand, 17736829 - 17736757
Alignment:
Q  201 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 273  Q
    |||||||||| | |||||| ||||||||||| || || || |||||||||||||| ||| | |||||||||||    
T  17736829 tttttcttacaaccaattaccattttcatctcaataatattaaacttcttcatcttcttcactcaacatgtga 17736757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 256
Target Start/End: Original strand, 37077663 - 37077707
Alignment:
Q  212 atcaattatcattttcatcttaagaacatcaaacttcttcatctc 256  Q
    |||| ||||||||||||||| |||||||| |||||||||||||||    
T  37077663 atcagttatcattttcatctcaagaacattaaacttcttcatctc 37077707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 187
Target Start/End: Complemental strand, 39730484 - 39730369
Alignment:
Q  72 cttcgaacttctt-atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaatt 170  Q
    ||||||||||||| |||| ||||||  || |||| || |||||||| || |||||||||||||||| |||  |||||| || |||||||||||  |||||    
T  39730484 cttcgaacttctttatctccttcatcgaagatgtaatatacatctcgtt-cgttccaaaatcgaattgtatatgtcatgaggggtaaattaccatcaatt 39730386  T
Q  171 catcaaggaaaaatgta 187  Q
    |||  | ||||||||||    
T  39730385 cattcaagaaaaatgta 39730369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 39808291 - 39808239
Alignment:
Q  217 ttatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacat 269  Q
    |||||||||||| ||||||| |||||||||| ||||||||||| ||| |||||    
T  39808291 ttatcattttcaccttaagaccatcaaactttttcatctccttcatttaacat 39808239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 221 - 270
Target Start/End: Complemental strand, 39730361 - 39730312
Alignment:
Q  221 cattttcatcttaagaacatcaaacttcttcatctcctttattcaacatg 270  Q
    ||||||||||| ||||||||||||||| |||||||| || ||| ||||||    
T  39730361 cattttcatctcaagaacatcaaactttttcatctctttcatttaacatg 39730312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 273
Target Start/End: Complemental strand, 22780399 - 22780347
Alignment:
Q  221 cattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 273  Q
    ||||||||||| || ||||  |||||||||||| ||||| |||||||||||||    
T  22780399 cattttcatctcaaaaacaataaacttcttcatatccttcattcaacatgtga 22780347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 37077760 - 37077832
Alignment:
Q  201 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 273  Q
    |||||||||| |||| ||| ||||||||||| || ||||||||| ||||| || |  || |||||||||||||    
T  37077760 tttttcttacaatcagttagcattttcatctcaaaaacatcaaatttcttaatttttttcattcaacatgtga 37077832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 83 - 269
Target Start/End: Complemental strand, 13712945 - 13712757
Alignment:
Q  83 ttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa-ggaaa 181  Q
    |||||| |||||||||||||||||| |||||||||||  ||||||||| | ||| ||| |||||||||| | |||||||||| |||| |||||| |||||    
T  13712945 ttatctccttcatttaacatgtgatctacatctctttg-gttccaaaacctaattgtatttgtcattagggataaattaccctcaatacatcaaaggaaa 13712847  T
Q  182 aatgtatgctcatcgata--gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacat 269  Q
    | |||| |||    ||||  |||||||||||||||| ||| ||||| |||||||||||||||||||||||| |||| |||||||||||||    
T  13712846 attgtaggcttgctgataaggtttttcttactatcagttaccatttccatcttaagaacatcaaacttctttatcttctttattcaacat 13712757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 91 - 269
Target Start/End: Complemental strand, 9050313 - 9050132
Alignment:
Q  91 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatg- 189  Q
    |||||||||||| ||||||||||||  ||| ||| || ||||||||| |||| ||||||||||||||||||||| ||||||||||||  | |||||  |     
T  9050313 ttcatttaacatttgatttacatcttcttt-gtttcataatcgaatcctactagtcattagaggtaaattaccctcaattcatcaagagataatgttggt 9050215  T
Q  190 ctcatcgat---agtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacat 269  Q
    ||| || ||   | |||||||||| |||| ||| ||||||||| | ||||||| ||||||||||||||||| | |||||||||    
T  9050214 ctcgtcaatataattttttcttacgatcagttaccattttcatatgaagaacaacaaacttcttcatctccatcattcaacat 9050132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 16576248 - 16576320
Alignment:
Q  201 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 273  Q
    |||||||||| |||||||| ||||||| ||| ||||||||||||||||||||||||||| |||||||||||||    
T  16576248 tttttcttacaatcaattaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 16576320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 204 - 273
Target Start/End: Original strand, 16863459 - 16863528
Alignment:
Q  204 ttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 273  Q
    ||||||| |||| ||| ||||||||||| |||||||||||| |||||||||| |||||||||| ||||||    
T  16863459 ttcttacaatcagttaccattttcatctcaagaacatcaaatttcttcatcttctttattcaatatgtga 16863528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 253
Target Start/End: Complemental strand, 38576955 - 38576791
Alignment:
Q  91 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatg- 189  Q
    |||||| |||||||||||| |||||| |||||| ||| |||| |||| || ||||||||||  |||||||| ||||||||||| ||||   |||||| |     
T  38576955 ttcattcaacatgtgatttccatctc-tttcgtaccataatcaaatcatatttgtcattaggagtaaatta-ccccaattcataaaggggtaatgtaggc 38576858  T
Q  190 ctcatcgata---gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcat 253  Q
    ||||||||||    |||||||||| |||| ||| ||||||||||| || |  |||||||||||||||    
T  38576857 ctcatcgataaggttttttcttacaatcagttaccattttcatctcaatataatcaaacttcttcat 38576791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 180
Target Start/End: Complemental strand, 38576764 - 38576707
Alignment:
Q  123 ttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaa 180  Q
    ||||||||||||||| ||||||||||| |||||||||||||  | |||||||||||||    
T  38576764 ttccaaaatcgaatcatacttgtcatttgaggtaaattaccttcgattcatcaaggaa 38576707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 223 - 271
Target Start/End: Original strand, 2909844 - 2909892
Alignment:
Q  223 ttttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 271  Q
    ||||||| |||| |||||||||||||||||||||||| |||||||||||    
T  2909844 ttttcattttaaaaacatcaaacttcttcatctccttcattcaacatgt 2909892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 270
Target Start/End: Original strand, 16576290 - 16576486
Alignment:
Q  77 aacttctt-atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatca 175  Q
    |||||||| |||| ||||||| |||||||||| | | |||| || ||||||| ||||||||| ||||| ||||||| ||||||||| ||| |||||||||    
T  16576290 aacttcttcatctccttcattcaacatgtgatctccttctcatt-cgttccagaatcgaatcatacttatcattaggggtaaattaaccc-aattcatca 16576387  T
Q  176 aggaaaaatgtatgctcatcg-atag---tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatg 270  Q
    |||   || ||| || |  || ||||   |||||||||| |||| ||||||||||||| | || |||| ||||| ||||||| ||||| ||| ||||||    
T  16576388 aggggtaacgtaggccccacggatagagttttttcttacaatcatttatcattttcatttcaaaaacaacaaacatcttcatatccttcatttaacatg 16576486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 161
Target Start/End: Original strand, 9931337 - 9931406
Alignment:
Q  91 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaatta 161  Q
    ||||||| ||||||||| | |||||||||| ||||||||||||||||||| |||||||  | |||||||||    
T  9931337 ttcattttacatgtgatattcatctctttt-gttccaaaatcgaatcgtatttgtcatgtggggtaaatta 9931406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 38577001 - 38576940
Alignment:
Q  212 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 273  Q
    |||| ||| ||||||||||| |||||||| ||| ||||||||||| || |||||||||||||    
T  38577001 atcagttaccattttcatctaaagaacattaaagttcttcatctctttcattcaacatgtga 38576940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 175
Target Start/End: Original strand, 25606423 - 25606506
Alignment:
Q  91 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatca 175  Q
    |||||| ||||| |||| |||||||| || ||||||| || |||||| ||||||| ||||  |||||||||||| ||||||||||    
T  25606423 ttcattcaacatatgatatacatctcctt-cgttccataaacgaatcctacttgttattaagggtaaattaccctcaattcatca 25606506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 34176654 - 34176697
Alignment:
Q  212 atcaattatcattttcatcttaagaacatcaaacttcttcatct 255  Q
    |||| ||| ||||||||||||||||| |||||||||||||||||    
T  34176654 atcagttaccattttcatcttaagaatatcaaacttcttcatct 34176697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 271
Target Start/End: Original strand, 35370402 - 35370468
Alignment:
Q  205 tcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 271  Q
    |||||| |||| ||| |||||| |||| ||||| | ||||||||||| ||||||| |||||||||||    
T  35370402 tcttacaatcagttaccattttaatctcaagaataccaaacttcttcgtctccttcattcaacatgt 35370468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 176
Target Start/End: Original strand, 28282699 - 28282791
Alignment:
Q  83 ttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa 176  Q
    |||||| ||||||| || ||||||| | |||||| || ||||||| |||| |||  ||||||| ||||| |||||||||||  |||||||||||    
T  28282699 ttatctgcttcattcaatatgtgatctccatctcatt-cgttccataatcaaattttacttgttattaggggtaaattaccgtcaattcatcaa 28282791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 269
Target Start/End: Original strand, 25606366 - 25606434
Alignment:
Q  201 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacat 269  Q
    ||||||||||  |||| ||||||||||| ||  ||||||||||| ||||||||||  || |||||||||    
T  25606366 tttttcttacactcaaatatcattttcaactccagaacatcaaaattcttcatctgtttcattcaacat 25606434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 28282824 - 28282876
Alignment:
Q  201 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcat 253  Q
    |||||||||| ||||||||||||||||||||  | || ||||||||| |||||    
T  28282824 tttttcttacaatcaattatcattttcatctccataatatcaaactttttcat 28282876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 83 - 259
Target Start/End: Complemental strand, 25234393 - 25234217
Alignment:
Q  83 ttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaa 182  Q
    |||||| ||||||||||  ||||||||| | |||||  |||||||||||||||||||| ||||||| || ||||||||||||  ||||||||||||||||    
T  25234393 ttatctccttcatttaaggtgtgatttatacctctta-cgttccaaaatcgaatcgtatttgtcatgagcggtaaattacccgtaattcatcaaggaaaa 25234295  T
Q  183 atgtatgctcatcgata-gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctt 259  Q
    ||||| |||||| |||| | ||||||||  |||| ||| ||||||||||| |||||||||||| ||||| || |||||    
T  25234294 atgtaggctcattgatatggttttcttagcatcagttaccattttcatctcaagaacatcaaatttcttaatatcctt 25234217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 77 - 255
Target Start/End: Original strand, 25062361 - 25062544
Alignment:
Q  77 aacttctt-atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatca 175  Q
    |||||||| |||| ||||||| |||||||||| | |||||| ||| |||||| |||| |||| ||||||| ||||| |||||||||||| ||||||||||    
T  25062361 aacttcttcatctgcttcattaaacatgtgatcttcatctccttt-gttccataatcaaatcctacttgttattaggggtaaattaccctcaattcatca 25062459  T
Q  176 aggaaaaatgtatgc-tcatcgat----agtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatct 255  Q
    ||||| |||||| || ||| | ||      |||||||||| |||||||| | ||||||||| ||||| |||||||||||||||||    
T  25062460 aggaataatgtaggcttcaccaatttggtttttttcttacaatcaattaccgttttcatctcaagaatatcaaacttcttcatct 25062544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 156 - 273
Target Start/End: Complemental strand, 15131698 - 15131578
Alignment:
Q  156 aaattacccccaattcatcaaggaaaaatgtatgctcatcgatag---tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttca 252  Q
    |||||||||  ||||||||||| |  |||||| |||||||||||    ||||||||||||||| ||| |||||| |||| |||||||||||| |||||||    
T  15131698 aaattacccttaattcatcaagaattaatgtaggctcatcgatatggttttttcttactatcagttaccatttttatctcaagaacatcaaatttcttca 15131599  T
Q  253 tctcctttattcaacatgtga 273  Q
    ||||||| ||||| |||||||    
T  15131598 tctccttcattcagcatgtga 15131578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 273
Target Start/End: Complemental strand, 54000199 - 54000050
Alignment:
Q  127 aaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatgctcatcgatag---tttttcttactatcaattatcat 223  Q
    |||||||||||||| ||||||| |   ||||||||| | || ||||| ||  |||||||||   |||||||||    ||||||||||||||||||| |||    
T  54000199 aaaatcgaatcgtatttgtcatgacgagtaaattacactcagttcataaaaaaaaaatgtagattcatcgatatggttttttcttactatcaattaccat 54000100  T
Q  224 tttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 273  Q
    |||||||| ||||||||||||    |||||| | ||||||||||||||||    
T  54000099 tttcatctcaagaacatcaaaaaaattcatcacatttattcaacatgtga 54000050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 270
Target Start/End: Complemental strand, 4115452 - 4115389
Alignment:
Q  207 ttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatg 270  Q
    ||||||| ||||| |||||| ||||||||||||| |||||||| |||||| || ||||||||||    
T  4115452 ttactattaattaccatttttatcttaagaacatgaaacttctccatctcattcattcaacatg 4115389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 271
Target Start/End: Complemental strand, 20512891 - 20512832
Alignment:
Q  212 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 271  Q
    ||||||| ||||||||||||||  |||||||||||||||||||| ||| ||| |||||||    
T  20512891 atcaattgtcattttcatcttataaacatcaaacttcttcatcttcttcatttaacatgt 20512832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 273
Target Start/End: Original strand, 22050851 - 22050924
Alignment:
Q  200 gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 273  Q
    ||||||||||| || | |||||||||| ||||||| ||||  ||  |||||||||||||| |||||||||||||    
T  22050851 gtttttcttacaattagttatcatttttatcttaaaaacaataagtttcttcatctccttcattcaacatgtga 22050924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 176
Target Start/End: Original strand, 55897600 - 55897693
Alignment:
Q  83 ttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa 176  Q
    ||||||| |||||| ||||| |||| | |||||||||||||||||||||  |||  ||||||| ||||  |||||| || || |||||||||||    
T  55897600 ttatcttattcattcaacatatgatcttcatctcttttcgttccaaaattaaattctacttgttattaagggtaaactatcctcaattcatcaa 55897693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 54000275 - 54000219
Alignment:
Q  217 ttatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 273  Q
    |||||||||| ||||||| ||||||||||||||| |||||||| ||| || ||||||    
T  54000275 ttatcatttttatcttaaaaacatcaaacttctttatctccttcatttaagatgtga 54000219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 273
Target Start/End: Original strand, 25062340 - 25062391
Alignment:
Q  222 attttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 273  Q
    ||||| ||||| |||||||||||||||||||||| ||| ||| |||||||||    
T  25062340 atttttatcttcagaacatcaaacttcttcatctgcttcattaaacatgtga 25062391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 11020144 - 11020084
Alignment:
Q  212 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 273  Q
    |||| |||||||||||||||||| || ||||||| | || |||||||||||| |||||||||    
T  11020144 atcagttatcattttcatcttaaaaatatcaaacct-tttatctcctttatttaacatgtga 11020084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 178
Target Start/End: Original strand, 22050903 - 22050995
Alignment:
Q  85 atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaagg 178  Q
    |||| ||||||| |||||||||| | |||||| || | ||| | ||||||||| || || ||||||  ||||||||||||||||||||| ||||    
T  22050903 atctccttcattcaacatgtgatcttcatctcattcctttc-agaatcgaatcatatttatcattaagggtaaattacccccaattcataaagg 22050995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 115 - 270
Target Start/End: Original strand, 39341110 - 39341268
Alignment:
Q  115 tcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatgctcatcgatag---tttttcttact 211  Q
    ||||| ||||| ||| ||||||| || || || | || ||||||||| || ||||| ||||||||||||| |||||||| |||||    |||||||||||    
T  39341110 tctttacgttctaaagtcgaatcatatttatcgtgaggggtaaattatcctcaattaatcaaggaaaaatatatgctcaccgatataattttttcttact 39341209  T
Q  212 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatg 270  Q
    || | ||| ||||||||||||||||| ||||||||| ||||||||||| ||||||||||    
T  39341210 atgagttaccattttcatcttaagaatatcaaactttttcatctccttcattcaacatg 39341268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 273
Target Start/End: Complemental strand, 42091951 - 42091794
Alignment:
Q  118 tttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatg-ctcatcgatagtttttc-ttactatca 215  Q
    |||||||||| |||| | || ||||||| ||||| ||||||||||||||||||| ||||||   | |||||| |||| | ||  |||||| |||| || |    
T  42091951 tttcgttccataatcaagtcttacttgtgattaggggtaaattacccccaattcgtcaaggggtattgtatgtctcaccaatgctttttccttacaatta 42091852  T
Q  216 attatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 273  Q
    |||||||||||||||| || |||||||||||| |||||||| || ||| |||||||||    
T  42091851 attatcattttcatctcaaaaacatcaaactttttcatctctttcatttaacatgtga 42091794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 202 - 273
Target Start/End: Original strand, 46303371 - 46303442
Alignment:
Q  202 ttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 273  Q
    ||||||||| ||||| ||||||||| ||||  ||| |||||||||||||||||| |||||||||||||||||    
T  46303371 ttttcttacaatcaaatatcatttttatctatagagcatcaaacttcttcatcttctttattcaacatgtga 46303442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 178
Target Start/End: Original strand, 54437848 - 54437949
Alignment:
Q  77 aacttctt-atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatca 175  Q
    |||||||| |||||| |||||||||| ||| ||| ||||| ||||| ||  |||||| |||| || || ||||||||||||||||||||| |||||| ||    
T  54437848 aacttcttcatcttcctcatttaacacgtggtttccatct-ttttcattttaaaatcaaatcatatttatcattagaggtaaattacccctaattcaaca 54437946  T
Q  176 agg 178  Q
    |||    
T  54437947 agg 54437949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 257
Target Start/End: Original strand, 31758242 - 31758298
Alignment:
Q  200 gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcc 257  Q
    ||||||||||| |||||||| |||||||||||||| || |||||||||||| ||||||    
T  31758242 gtttttcttacaatcaattaccattttcatcttaa-aatatcaaacttcttaatctcc 31758298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 39341283 - 39341340
Alignment:
Q  119 ttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa 176  Q
    ||||||| ||||| ||||| || || ||||||||||||||||||||| ||||||||||    
T  39341283 ttcgttctaaaattgaatcttatttatcattagaggtaaattacccctaattcatcaa 39341340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 273
Target Start/End: Complemental strand, 34762028 - 34761956
Alignment:
Q  201 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 273  Q
    |||||||| | ||||||||||||||||||||  |||| ||||||| | || |||||||| | |||||||||||    
T  34762028 tttttctttcaatcaattatcattttcatctcgagaatatcaaacctttttatctccttcactcaacatgtga 34761956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 255
Target Start/End: Original strand, 54437806 - 54437860
Alignment:
Q  201 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatct 255  Q
    |||||||||| |||| ||| |||||| |||| || ||||||||||||||||||||    
T  54437806 tttttcttacaatcagttaccattttaatctcaaaaacatcaaacttcttcatct 54437860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 269
Target Start/End: Original strand, 48646423 - 48646479
Alignment:
Q  212 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacat 269  Q
    |||||| | ||||||||||||||||||||||||||| ||||| | ||| |||||||||    
T  48646423 atcaatgaccattttcatcttaagaacatcaaactt-ttcatattcttcattcaacat 48646479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 273
Target Start/End: Complemental strand, 20519351 - 20519299
Alignment:
Q  221 cattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 273  Q
    ||||||||||| |||||| ||||| ||||||||||| || ||| |||||||||    
T  20519351 cattttcatctcaagaacgtcaaatttcttcatctctttcattaaacatgtga 20519299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 54437651 - 54437707
Alignment:
Q  215 aattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 271  Q
    ||||| ||||||||||| || ||||| |||||||||||| ||||| ||| |||||||    
T  54437651 aattaccattttcatctcaataacattaaacttcttcatatccttcatttaacatgt 54437707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 119 - 271
Target Start/End: Original strand, 20068000 - 20068155
Alignment:
Q  119 ttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatg-ctcatcgatag---tttttcttactatc 214  Q
    ||||||||| ||||||||| |||||||| |||  |||||||||||  ||||||||||| | |||||||| | |||||| ||||   |||||||||| |||    
T  20068000 ttcgttccataatcgaatcctacttgtctttaagggtaaattaccttcaattcatcaaaggaaaatgtaagcctcatccatagtgctttttcttacaatc 20068099  T
Q  215 aattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 271  Q
     | || ||||||||| |  ||||||||||||||| ||||||| || |||||||||||    
T  20068100 -agtaccattttcatgtagagaacatcaaacttcctcatctctttcattcaacatgt 20068155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 270
Target Start/End: Original strand, 32342600 - 32342669
Alignment:
Q  201 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatg 270  Q
    |||||||||| |||||||||||||||||||| || |||||||||||| |||||||| || ||||||||||    
T  32342600 tttttcttacaatcaattatcattttcatctcaaaaacatcaaactttttcatctcattcattcaacatg 32342669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 269
Target Start/End: Original strand, 23577118 - 23577219
Alignment:
Q  170 tcatcaaggaaaaatgtatgctcatcgata--gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaac 267  Q
    |||| ||||||||||||| |||||  ||||  |||||||||| || || ||| ||||||||||| || ||||||| |||||| ||||||||| |||||||    
T  23577118 tcatgaaggaaaaatgtaggctcaatgatatggtttttcttagtaacagttaccattttcatctcaaaaacatcatacttctccatctccttcattcaac 23577217  T
Q  268 at 269  Q
    ||    
T  23577218 at 23577219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 221 - 269
Target Start/End: Original strand, 32047194 - 32047242
Alignment:
Q  221 cattttcatcttaagaacatcaaacttcttcatctcctttattcaacat 269  Q
    ||||||||||| |||||||||||||||||||||||| || |||||||||    
T  32047194 cattttcatctcaagaacatcaaacttcttcatctcattcattcaacat 32047242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 20206527 - 20206481
Alignment:
Q  204 ttcttactatcaattatcattttcatcttaagaacatcaaacttctt 250  Q
    ||||||| |||||||||||||||||||| || |||||||||||||||    
T  20206527 ttcttacaatcaattatcattttcatctcaataacatcaaacttctt 20206481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 22100550 - 22100504
Alignment:
Q  204 ttcttactatcaattatcattttcatcttaagaacatcaaacttctt 250  Q
    ||||||| |||||||||||||||||||| || |||||||||||||||    
T  22100550 ttcttacaatcaattatcattttcatctcaataacatcaaacttctt 22100504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 178
Target Start/End: Original strand, 32047262 - 32047317
Alignment:
Q  123 ttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaagg 178  Q
    ||||| ||| ||||| ||||| ||||||||||||||||| || |||||||||||||    
T  32047262 ttccataattgaatcctacttatcattagaggtaaattatcctcaattcatcaagg 32047317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 148
Target Start/End: Original strand, 23577068 - 23577121
Alignment:
Q  94 atttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcat 148  Q
    |||||| |||| |||||||||||||||  |||||||||||||||||| |||||||    
T  23577068 atttaagatgttatttacatctctttta-ttccaaaatcgaatcgtatttgtcat 23577121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 26236797 - 26236751
Alignment:
Q  129 aatcgaatcgtacttgtcattagaggtaaattacccccaattcatca 175  Q
    ||||||||| ||||| | |||||||||||||||||||||||| ||||    
T  26236797 aatcgaatcatacttattattagaggtaaattacccccaatttatca 26236751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 263
Target Start/End: Original strand, 23577009 - 23577070
Alignment:
Q  202 ttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttatt 263  Q
    |||| |||| |||||||||||||||||| |||| ||||| ||| ||||| ||||| ||||||    
T  23577009 tttttttacaatcaattatcattttcattttaaaaacataaaatttctttatctcttttatt 23577070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 201 - 271
Target Start/End: Original strand, 46080971 - 46081041
Alignment:
Q  201 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 271  Q
    |||||||||| |||||||| ||||||||||| |||||||| |||||||||||||||||| | |||||||||    
T  46080971 tttttcttacaatcaattaccattttcatctcaagaacattaaacttcttcatctccttcactcaacatgt 46081041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 269
Target Start/End: Original strand, 10775163 - 10775231
Alignment:
Q  201 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacat 269  Q
    |||||||||  |||||||| |||||||||||||||||||||||||||||||||||| ||  ||||||||    
T  10775163 tttttcttagaatcaattaccattttcatcttaagaacatcaaacttcttcatctctttcgttcaacat 10775231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 273
Target Start/End: Complemental strand, 34601516 - 34601444
Alignment:
Q  201 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 273  Q
    |||||| ||| ||||||||  | ||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  34601516 tttttcctacaatcaattacaacttttatcttaagaacatcaaacttcctcatctcctttattcaacatgtga 34601444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 271
Target Start/End: Complemental strand, 7997314 - 7997194
Alignment:
Q  154 gtaaattacccccaattcatcaaggaaaaatgtatgctcatcgatag---tttttcttactatcaattatcattttcatcttaagaacatcaaacttctt 250  Q
    |||||||||||| ||||||||||| |||||||||   |||||||||    ||||||||| ||||||||| |||||||||||  | || ||| ||||||||    
T  7997314 gtaaattaccccaaattcatcaagaaaaaatgtagattcatcgatatgattttttcttagtatcaattaccattttcatctctataatatctaacttctt 7997215  T
Q  251 catctcctttattcaacatgt 271  Q
    ||| || || |||||||||||    
T  7997214 catttctttcattcaacatgt 7997194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 253
Target Start/End: Complemental strand, 44342145 - 44342055
Alignment:
Q  164 cccaattcatcaaggaaaaatgtatgctcatcgata---gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcat 253  Q
    |||||||||||||||||||||||| ||||| |||||    |||||||||||||| |||| ||||||||| | || ||||||||||||||||||    
T  44342145 cccaattcatcaaggaaaaatgtaggctcaccgatatagttttttcttactatc-attaccattttcatatcaa-aacatcaaacttcttcat 44342055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 178
Target Start/End: Original strand, 3232179 - 3232271
Alignment:
Q  85 atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaagg 178  Q
    |||||||||||| ||||||| || | ||||||||| | ||| |  |||||||| ||||| |||||||||||||||| |||| ||||||||||||    
T  3232179 atcttcttcattcaacatgtaatctccatctctttac-ttctagtatcgaatcatacttatcattagaggtaaattgcccctaattcatcaagg 3232271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 170
Target Start/End: Original strand, 7104316 - 7104400
Alignment:
Q  85 atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaatt 170  Q
    |||| ||||||| ||||||| || | ||||||||| |||| || ||||||||| |||||||||||||| |||| ||||||||||||    
T  7104316 atctccttcattcaacatgtaatattcatctcttt-cgtttcagaatcgaatcatacttgtcattagaagtaatttacccccaatt 7104400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 24873765 - 24873838
Alignment:
Q  201 tttttcttactatcaattatcattttcatcttaagaacatcaaacttctt-catctcctttattcaacatgtga 273  Q
    |||||||||| |||||||| ||||||||| ||||||| ||||||||| || ||||||| | |||||||||||||    
T  24873765 tttttcttacaatcaattaccattttcattttaagaagatcaaacttttttcatctccataattcaacatgtga 24873838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 24874598 - 24874671
Alignment:
Q  201 tttttcttactatcaattatcattttcatcttaagaacatcaaacttctt-catctcctttattcaacatgtga 273  Q
    |||||||||| |||||||| ||||||||| ||||||| ||||||||| || ||||||| | |||||||||||||    
T  24874598 tttttcttacaatcaattaccattttcattttaagaagatcaaacttttttcatctccataattcaacatgtga 24874671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 42819621 - 42819674
Alignment:
Q  201 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatc 254  Q
    |||||||||| |||||||||||||||||||| |||||||| |||||| ||||||    
T  42819621 tttttcttacaatcaattatcattttcatctcaagaacataaaacttattcatc 42819674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 52432672 - 52432733
Alignment:
Q  212 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 273  Q
    |||||||| ||||||||||| |||||||| |||||||||||||||||| ||| |||| ||||    
T  52432672 atcaattaccattttcatctcaagaacattaaacttcttcatctccttcatttaacaagtga 52432733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 12144970 - 12145039
Alignment:
Q  201 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 273  Q
    |||||||||| ||||||||||||||| |||| || |   ||||||||||||||||| || |||||||||||||    
T  12144970 tttttcttacaatcaattatcatttttatctcaata---tcaaacttcttcatctcattcattcaacatgtga 12145039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 163
Target Start/End: Original strand, 49897909 - 49897998
Alignment:
Q  74 tcgaacttcttat-cttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacc 163  Q
    ||||||||||| | || ||||||| |||||||||| | |||||| ||| |||| | ||||||||| || ||||||||||||||||||||||    
T  49897909 tcgaacttcttcttctccttcattcaacatgtgatctccatctccttt-gttctagaatcgaatcataattgtcattagaggtaaattacc 49897998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 163
Target Start/End: Original strand, 67982 - 68054
Alignment:
Q  90 cttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacc 163  Q
    |||||||  ||||||||| | ||||||||| | ||||||||||| ||| || ||||||||||||||||||||||    
T  67982 cttcattctacatgtgatcttcatctcttt-cattccaaaatcggatcataattgtcattagaggtaaattacc 68054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 68097 - 68169
Alignment:
Q  201 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 273  Q
    |||||||||| || | ||| |||||| || | ||||||||| ||||||||||||||||| ||| |||||||||    
T  68097 tttttcttacaatgagttaccatttttatttcaagaacatctaacttcttcatctccttcatttaacatgtga 68169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 136
Target Start/End: Original strand, 68139 - 68198
Alignment:
Q  77 aacttctt-atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaat 136  Q
    |||||||| |||| |||||||||||||||||| | ||||| ||||||||||||||||||||    
T  68139 aacttcttcatctccttcatttaacatgtgatctccatct-ttttcgttccaaaatcgaat 68198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 49897870 - 49897942
Alignment:
Q  201 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 273  Q
    |||||||||| || ||||| |||||| | || |||||| || ||||||||| ||||||| |||||||||||||    
T  49897870 tttttcttacgattaattaccatttttagctcaagaacgtcgaacttcttcttctccttcattcaacatgtga 49897942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 273
Target Start/End: Original strand, 3231979 - 3232030
Alignment:
Q  222 attttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 273  Q
    |||||||||| ||||||| ||||||||||||| || || |||||||||||||    
T  3231979 attttcatctcaagaacaacaaacttcttcatgtcattcattcaacatgtga 3232030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 273
Target Start/End: Complemental strand, 38839715 - 38839664
Alignment:
Q  222 attttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 273  Q
    |||||||||| ||||||||||||| ||||||||| ||| |||| ||||||||    
T  38839715 attttcatctcaagaacatcaaacctcttcatcttcttcattcgacatgtga 38839664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 10775028 - 10775089
Alignment:
Q  212 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 273  Q
    ||||| ||||||||||||||  ||||||||||| |||||| |||  || |||||||||||||    
T  10775028 atcaaatatcattttcatctccagaacatcaaatttcttcgtctgtttcattcaacatgtga 10775089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 3367806 - 3367854
Alignment:
Q  225 ttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 273  Q
    ||||||| |||||||||||| || |||||||| || |||||||||||||    
T  3367806 ttcatctcaagaacatcaaattttttcatctcattcattcaacatgtga 3367854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 37033 - 36976
Alignment:
Q  217 ttatcattttcatcttaaga-acatcaaacttcttcatctcctttattcaacatgtga 273  Q
    |||||||||||||||||| | |||||||| ||||||||||| ||||||||||||||||    
T  37033 ttatcattttcatcttaaaacacatcaaatttcttcatctcgtttattcaacatgtga 36976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1743 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 271
Target Start/End: Original strand, 794 - 853
Alignment:
Q  212 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 271  Q
    |||| ||||||||||| | | ||| | ||||||||||||||||||||| |||||||||||    
T  794 atcatttatcattttcctttcaagtatatcaaacttcttcatctccttgattcaacatgt 853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 259
Target Start/End: Complemental strand, 62791 - 62744
Alignment:
Q  212 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctt 259  Q
    |||| |||||| ||||||||||| ||||||||||||||| ||||||||    
T  62791 atcagttatcaatttcatcttaaaaacatcaaacttctttatctcctt 62744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University