View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_156 (Length: 272)
Name: NF8810A_low_156
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_156 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 24511577 - 24511831
Alignment:
| Q |
1 |
tcattggctataataaaggaaataagtcgtattgtactgcaatactacaagtcaaacaaacnnnnnnngtggtattgtactgcactatgnnnnnnnnn-- |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
24511577 |
tcattggctataataaaggaaataagtcgtattgtactgcaatactacaagtcaaacaaacaaaaaaagtcgtattgtactgcactatgttttttttttt |
24511676 |
T |
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| Q |
99 |
-aattatgaatgaatacttttttaattatgaataaat-gggcttaaactctaaccacaagaacaataagcaaaagactaaa-acttataggaagtaaaag |
195 |
Q |
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|||||||||| |||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
24511677 |
taattatgaataaatatttttttaattatgaataaatagggcttaaactctaacca--agaacaataagcaaaagactaaatacttataggaagtgaaag |
24511774 |
T |
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| Q |
196 |
agttcctatcggtcatctagaaaaacaaaactacaactaagatgtatcccattaaat |
252 |
Q |
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||||||||||||||| | || ||||||||||||||||||||||||||||| ||||| |
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| T |
24511775 |
agttcctatcggtcaacaagggaaacaaaactacaactaagatgtatcccactaaat |
24511831 |
T |
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