View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_16 (Length: 463)
Name: NF8810A_low_16
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 27 - 461
Target Start/End: Complemental strand, 41498004 - 41497570
Alignment:
| Q |
27 |
ataccatggtcagaaagaaaagcaaaattggtttcaccattgaagtttatttaggaactcattttacttgggcttgaaataactgtcatcaattgaaagt |
126 |
Q |
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| T |
41498004 |
ataccatggtcagaaagaaaagcaaaattggtttcactattgaagtttatttaggaactcattttacttgggcttgaaataactgtcatcaattgaaagt |
41497905 |
T |
|
| Q |
127 |
tggtcaaatgcatcaaaattcgctttcaaaccaacaaactggctacctagttgagcacaaccaccatttggccacctgcagcctccatctttagtacgaa |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41497904 |
tggtcaaatgcatcaaaattcgctttcaaaccaacaaactggctacctagttgagcacaaccaccatttggccacctgcagcctccatctttagtacgaa |
41497805 |
T |
|
| Q |
227 |
acgggcatagagagtcacatattcgaccaataacatcgtttccatcatcaccgtcatcttctgttacagacacatatagatcctttttgtcgttaatcac |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41497804 |
acgggcatagagagtcacatattcgaccaataacatcgtttccatcatcaccgtcatcttctgttacagacacatatagatcctttttgtcgttaatcac |
41497705 |
T |
|
| Q |
327 |
agcactacttgatccttgcctagaggaacaatacaagtttggatgtgctcccgctgggttgttttcaatgtcaacaatgcaatcaccactactagaaatg |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41497704 |
agcactacttgatccttgcctagaggaacaatacaagtttggatgtgctcccgctgggttgttttcaatgtcaacaatgcaatcaccactactagaaatg |
41497605 |
T |
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| Q |
427 |
tgaatcttgcacccaattgactgaattgcacgctt |
461 |
Q |
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| T |
41497604 |
tgaatcttgcacccaattgactgaattgcacgctt |
41497570 |
T |
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