View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8810A_low_165 (Length: 263)

Name: NF8810A_low_165
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8810A_low_165
NF8810A_low_165
[»] chr1 (2 HSPs)
chr1 (1-257)||(18312856-18313113)
chr1 (28-117)||(43346831-43346920)
[»] chr8 (2 HSPs)
chr8 (16-120)||(7493687-7493788)
chr8 (30-117)||(21138314-21138401)
[»] chr2 (3 HSPs)
chr2 (31-116)||(30934144-30934229)
chr2 (63-117)||(21534689-21534743)
chr2 (69-118)||(8755039-8755088)
[»] chr4 (4 HSPs)
chr4 (44-120)||(9744754-9744830)
chr4 (54-117)||(13901179-13901242)
chr4 (16-118)||(43719683-43719785)
chr4 (63-104)||(34979239-34979280)
[»] chr7 (2 HSPs)
chr7 (25-84)||(20909308-20909367)
chr7 (44-109)||(2916533-2916598)


Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 18312856 - 18313113
Alignment:
Q  1 atggcagaaaacaacaacaatgcaaatgtgttaaaacattcattacatgttgtttgacgttcaatgtatgtagaaaccttctaggaatccttcttcaata 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  18312856 atggcagaaaacaacaacaatgtaaatgtgttaaaacattcattacatgttgtttgacgttcaatgtatgtagaaaccttctagcaatccttcttcaata 18312955  T
Q  101 atttgagaccaagattttgcnnnnnnn-taaatcaaaatttgagttttcttgatggaagatgaaagaaaaactaggtgaatgcaaagtgaggtggagctg 199  Q
    ||||||||||||||||||||        |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18312956 atttgagaccaagattttgcaaaaaatataaatcaaaatttgagtttttttgatggaagatggaagaaaaactaggtgaatgcaaagtgaggtggagctg 18313055  T
Q  200 gcttgccttatacgtgaaaatggcacgaacgatagttaactgttattgaacactgaac 257  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  18313056 gcttgccttatacgtgaaaatgtcacgaatgatagttaactgttattgaacactgaac 18313113  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 117
Target Start/End: Complemental strand, 43346920 - 43346831
Alignment:
Q  28 gtgttaaaacattcattacatgttgtttgacgttcaatgtatgtagaaaccttctaggaatccttcttcaataatttgagaccaagattt 117  Q
    ||||||||| || |||||| ||||  ||||||   ||| | |||||||||||||||| ||||||||| |||| ||| || ||||||||||    
T  43346920 gtgttaaaagatgcattacttgtttgttgacgccaaatatgtgtagaaaccttctagcaatccttctccaatgattagaaaccaagattt 43346831  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 7493788 - 7493687
Alignment:
Q  16 aacaatgcaaatgtgttaaaacattcattacatgttgtttgacgttcaatgtatgtagaaaccttctaggaatccttcttcaataatttgagaccaagat 115  Q
    ||||||| ||||||||||||| || ||||||| |||  |||||||| ||||  |||||||| ||| ||| ||   ||||| ||| |||||||||||||||    
T  7493788 aacaatgtaaatgtgttaaaagatgcattacacgtttcttgacgttaaatgagtgtagaaatcttttagcaa---ttcttaaatgatttgagaccaagat 7493692  T
Q  116 tttgc 120  Q
    |||||    
T  7493691 tttgc 7493687  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 21138401 - 21138314
Alignment:
Q  30 gttaaaacattcattacatgttgtttgacgttcaatgtatgtagaaaccttctaggaatccttcttcaataatttgagaccaagattt 117  Q
    ||||||| || |||||| ||||  |||| ||  ||||| |||||||||||||||| |||| |||| |||| |||||| ||||||||||    
T  21138401 gttaaaagatgcattacttgtttcttgatgtcaaatgtgtgtagaaaccttctagcaatctttctccaatgatttgaaaccaagattt 21138314  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 116
Target Start/End: Complemental strand, 30934229 - 30934144
Alignment:
Q  31 ttaaaacattcattacatgttgtttgacgttcaatgtatgtagaaaccttctaggaatccttcttcaataatttgagaccaagatt 116  Q
    |||||| || |||||  |||| |||||| || ||||| |||||||||| ||||  |||||||||||||| ||||||||| ||||||    
T  30934229 ttaaaatatacattatctgttttttgacattaaatgtgtgtagaaaccatctaacaatccttcttcaatgatttgagacaaagatt 30934144  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 117
Target Start/End: Complemental strand, 21534743 - 21534689
Alignment:
Q  63 aatgtatgtagaaaccttctaggaatccttcttcaataatttgagaccaagattt 117  Q
    ||||| |||||||||||||||| ||||||||| || | ||||||| |||||||||    
T  21534743 aatgtgtgtagaaaccttctagaaatccttctccattgatttgagtccaagattt 21534689  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 8755088 - 8755039
Alignment:
Q  69 tgtagaaaccttctaggaatccttcttcaataatttgagaccaagatttt 118  Q
    |||||||||||||||| ||||||||| |||| |||||||| ||| |||||    
T  8755088 tgtagaaaccttctagcaatccttctccaatgatttgagatcaaaatttt 8755039  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 120
Target Start/End: Complemental strand, 9744830 - 9744754
Alignment:
Q  44 tacatgttgtttgacgttcaatgtatgtagaaaccttctaggaatccttcttcaataatttgagaccaagattttgc 120  Q
    ||||||||  |||||||| ||||  ||||||||  |||||| ||||||||| |||| |||||||| |||||||||||    
T  9744830 tacatgtttattgacgttaaatgagtgtagaaatattctagcaatccttctccaattatttgagatcaagattttgc 9744754  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 13901179 - 13901242
Alignment:
Q  54 ttgacgttcaatgtatgtagaaaccttctaggaatccttcttcaataatttgagaccaagattt 117  Q
    |||||||  ||||| |||||||||||||||| |||| |||| |||| |||||| ||||||||||    
T  13901179 ttgacgtcaaatgtgtgtagaaaccttctagcaatcattctccaatgatttgaaaccaagattt 13901242  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 43719683 - 43719785
Alignment:
Q  16 aacaatgcaaatgtgttaaaacattcattacatgttgtttgacgttcaatgtatgtagaaaccttctaggaatccttcttcaataatttgagaccaagat 115  Q
    ||||||| ||| | ||||||| || ||||| || ||  ||||||||  ||| ||||||||| ||||||  |||||||||||||| ||||||||| | |||    
T  43719683 aacaatgtaaacgggttaaaagatgcattatatatttgttgacgttagatgaatgtagaaatcttctaacaatccttcttcaatgatttgagactaggat 43719782  T
Q  116 ttt 118  Q
    |||    
T  43719783 ttt 43719785  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 34979280 - 34979239
Alignment:
Q  63 aatgtatgtagaaaccttctaggaatccttcttcaataattt 104  Q
    ||||| |||||||||||||||| |||||||||||||| ||||    
T  34979280 aatgtgtgtagaaaccttctagcaatccttcttcaatgattt 34979239  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 20909308 - 20909367
Alignment:
Q  25 aatgtgttaaaacattcattacatgttgtttgacgttcaatgtatgtagaaaccttctag 84  Q
    |||||||||||| ||||||| | |||| ||||||||  ||||| ||||||||||||||||    
T  20909308 aatgtgttaaaagattcattccttgttttttgacgtcaaatgtgtgtagaaaccttctag 20909367  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 2916533 - 2916598
Alignment:
Q  44 tacatgttgtttgacgttcaatgtatgtagaaaccttctaggaatccttcttcaataatttgagac 109  Q
    ||||||||  |||||||  |||| || |||||||||||||| | |||||||||||| |||||||||    
T  2916533 tacatgtttcttgacgtcaaatgaatatagaaaccttctagcattccttcttcaatgatttgagac 2916598  T

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