View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8810A_low_170 (Length: 261)
Name: NF8810A_low_170
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_170 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 5 - 260
Target Start/End: Original strand, 22826872 - 22827127
Alignment:
| Q |
5 |
aaccagagtttaagatggacaattggcatcaaatgtgagtctaacggcctttattaactatatctactccatgacgtgtttgttctaccattggtccccc |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22826872 |
aaccagagtttaagatggacaattggcatcaaatgtgagtctaacggcctttattaactatatctactccatgacgtgtttgttctaccattggtccccc |
22826971 |
T |
|
| Q |
105 |
ctcttaccatacatactcagttgagtaagcatgctctttccaacctctagaagtttgtgccaaacctctcctaatctgcattatgagtcatgtcaactag |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22826972 |
ctcttaccatacatactcagttgagtaagcatgctctttccaacctctagaagtttgtgcaaaacctctcctaatctgcattatgagtcatgtcaactag |
22827071 |
T |
|
| Q |
205 |
gtagtttgtttcccaatcgtgtcaagaaacgagttgggaatttactttgatatttg |
260 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
22827072 |
gtagtttgtttcccaatcgtgtcaaaaaacgagttgggaatttactttgatatttg |
22827127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University