View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8810A_low_182 (Length: 255)
Name: NF8810A_low_182
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_182 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 3 - 253
Target Start/End: Original strand, 42551177 - 42551432
Alignment:
| Q |
3 |
agcttaggtcatctcggaggtagtctttgagcaaaagggtaggctttgaggtatatttggttggttttattgttagagaattatcacgacgtgaaggttt |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42551177 |
agcttaggtcatctcggaggtagtctttgagcaaaagggtaggctttgaggtatatttggttggttttattattagagaattatcacgacgtgaaggttt |
42551276 |
T |
|
| Q |
103 |
gcaaatatttgaagccatgtatagaac----aaagtagctttgctatatgaatatttcaagagaatacactcataagaaaattgatgaactatggagaaa |
198 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42551277 |
gcaaatatttgaagccatgtatagaacaattaaagtagatttgctatatgaatatttcaagagaatacactcataagaaaattgatgaactatggagaaa |
42551376 |
T |
|
| Q |
199 |
ag-ttgtatggtgcagaagtttagatataagcaacatttatatatttttggagatg |
253 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
42551377 |
agagtgtatggtgcagaagtttagatataagcaacatttatatattgttggagatg |
42551432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University