View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_186 (Length: 254)
Name: NF8810A_low_186
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_186 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 30040838 - 30041079
Alignment:
| Q |
1 |
tcagatgacccttgtggagcaccttgggaaggagtaacctgcaataaatcaagggttacttcattgtaatatatataaattgaacattattattccttgt |
100 |
Q |
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| T |
30040838 |
tcagatgacccttgtggagcaccttgggaaggagtaatctgcaataaatcaagggttacttcattgtaatatatataaattgaacattattattccttgt |
30040937 |
T |
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| Q |
101 |
taactttggtatattaattttatcacccttttaatcacacttttccaacctactaatttaaaaaattctactttgtcatttacataaaaaatataggaga |
200 |
Q |
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| T |
30040938 |
taactttggtatattaattttatcacccttttactcacacttttccaacctactaatttaaaaaattctactttgtcatttacataaaaaatataggaga |
30041037 |
T |
|
| Q |
201 |
ttgtcaaccatgggcctgaagggtgaattaagtggagatatt |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
30041038 |
ttgtcaaccatgggcctgaagggtgaattaagtggagatatt |
30041079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 30030373 - 30030611
Alignment:
| Q |
1 |
tcagatgacccttgtggagcaccttgggaaggagtaacctgcaataaatcaagggttacttcattgtaatatata-taaattgaacattattattccttg |
99 |
Q |
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||||||||||||||||||||||| ||||||||||| |||||||| ||||| |||||||||||||||||||| ||| | |||| ||||||||| ||||| |
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| T |
30030373 |
tcagatgacccttgtggagcaccatgggaaggagtgacctgcaacaaatctagggttacttcattgtaataaatattcaattcaacattattgatccttt |
30030472 |
T |
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| Q |
100 |
ttaactttggtatattaattttatcacccttttaatcacacttttccaacctactaatttaaaaaattctactttgtcatttacataaaaaatataggag |
199 |
Q |
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| T |
30030473 |
tgaactttggtatattaatttcatcatctttttatt--cacttttccaa-ctactaatttaagaaa-aatattttgtcatgtgcatgaaaaatatagggg |
30030568 |
T |
|
| Q |
200 |
attgtcaaccatgggcctgaagggtgaattaagtggagatatt |
242 |
Q |
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| T |
30030569 |
actatcaaccatgggcctgaagggtaaattaagtggagatatt |
30030611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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