View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_189 (Length: 253)
Name: NF8810A_low_189
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_189 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 7 - 243
Target Start/End: Original strand, 36674780 - 36675015
Alignment:
| Q |
7 |
aaatggacgttggcggctctgtcatagtggctagtagatgatcagtatcttaacacacagtgccaactgccatcaaatgaacttaatttctcaatcatat |
106 |
Q |
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| T |
36674780 |
aaatggacgttggcggctctatcatagtggctagtagatgatcagtatcttaa-acacagtgccaactgccatcaaatgaacttaatttctcaatcatat |
36674878 |
T |
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| Q |
107 |
gctcaatcaaacttttctctatttataggacgaataccaccgtacatactccctcacaattagtcacaacacatgcaatatacatgatctacctaataca |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36674879 |
gctcaatcaaacttttctctatttataggacgaataccaccgtacatactccctcacaattagtcacaacacatgcaatatacatgatctacctaataca |
36674978 |
T |
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| Q |
207 |
attaaattcgtgcatttataagtttatactatattct |
243 |
Q |
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|||||||| |||||||||||||||||||||||||||| |
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| T |
36674979 |
attaaattagtgcatttataagtttatactatattct |
36675015 |
T |
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