View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_191 (Length: 251)
Name: NF8810A_low_191
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_191 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 41311253 - 41311027
Alignment:
| Q |
1 |
ttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctc |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311253 |
ttgaatggttctattcattggctggtttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctc |
41311154 |
T |
|
| Q |
101 |
tcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacacttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311153 |
tcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacacttaa |
41311054 |
T |
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| Q |
201 |
gatatgggtgatgcaagaatacacaat |
227 |
Q |
| |
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|||||||||||||||||||||| |||| |
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| T |
41311053 |
gatatgggtgatgcaagaatacgcaat |
41311027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 43164931 - 43164710
Alignment:
| Q |
1 |
ttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctc |
100 |
Q |
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|||||||||||||||||||||||| ||||| || || |||||||||| |||||||||||||||| |||||||||||||| |||| ||||||||| ||||| |
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| T |
43164931 |
ttgaatggttctattcattggctggtttataattatgagactgaaatagatgttattattgcctatgatttaaaggaaaagacaatgtcagagattgctc |
43164832 |
T |
|
| Q |
101 |
tcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacacttaa |
200 |
Q |
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| ||||||| |||||||||||||| ||| | | ||||||||||| ||||| || || ||||||| || |||||||||||||||||| |||||||||| |
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| T |
43164831 |
ttccagatgatttttatagtgatttttctcccaacctttatgatttgttggtacttcgcggacttatcagcgtatggaatatggagatgtctacacttaa |
43164732 |
T |
|
| Q |
201 |
gatatgggtgatgcaagaatac |
222 |
Q |
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||||||||| |||||||||||| |
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| T |
43164731 |
gatatgggtaatgcaagaatac |
43164710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 30165677 - 30165883
Alignment:
| Q |
4 |
aatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcc |
103 |
Q |
| |
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||||||||||||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||||||||| |||| || |||||| ||||| | |
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| T |
30165677 |
aatggttctattcattggctggtttataattatcagactgaaatggatgttattattgcctttgatttaaaggaagcgacaatggcagagatagctcttc |
30165776 |
T |
|
| Q |
104 |
cagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacacttaagat |
203 |
Q |
| |
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|| ||| || || | ||| |||||||||||||| |||||||| ||||||| |||||||||||| |||||| | ||||| ||||||| |
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| T |
30165777 |
caaatgattgttctcgtg------------gaatttatgatttgttggtatttcatggacttatcagtgtatggaatgtggagaggtctacagttaagat |
30165864 |
T |
|
| Q |
204 |
atgggtgatgcaagaatac |
222 |
Q |
| |
|
||||||||||||||||||| |
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| T |
30165865 |
atgggtgatgcaagaatac |
30165883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 28181080 - 28180965
Alignment:
| Q |
9 |
ttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagat |
108 |
Q |
| |
|
|||||||||||||||| ||||| || || |||| |||| | |||||||||||||||||||||||||||||||||| ||||||| | ||||| |||||| |
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| T |
28181080 |
ttctattcattggctggtttataattatgagaccaaaattggtgttattattgcctttgatttaaaggaaatgacaatgtcagatatagctcttccagat |
28180981 |
T |
|
| Q |
109 |
ggtttttatagtgatt |
124 |
Q |
| |
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| ||||||||| |||| |
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| T |
28180980 |
gatttttatagggatt |
28180965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 30125207 - 30124981
Alignment:
| Q |
1 |
ttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctc |
100 |
Q |
| |
|
|||||||| |||||||||||||| || || || || |||| | | |||||||||| |||||||||||||||||||| |||| ||||||| | |||| |
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| T |
30125207 |
ttgaatgggactattcattggctggttcataatcatgagaccaacaaggatgttattgttgcctttgatttaaaggaagcgacaatgtcagaaatagctc |
30125108 |
T |
|
| Q |
101 |
tcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacacttaa |
200 |
Q |
| |
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| ||| ||| |||||||| ||||||||| || | |||||||||| | |||||||| ||||||| ||| |||||| | | |||||| | || |||| |
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| T |
30125107 |
ttccaaatgatttttataccgattactctcctgtagattatgatttgttagtatttggtggacttatcagtttatggattcttgagatggatgcagttaa |
30125008 |
T |
|
| Q |
201 |
gatatgggtgatgcaagaatacacaat |
227 |
Q |
| |
|
|||| |||||||||| |||||| |||| |
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|
| T |
30125007 |
gatacgggtgatgcatgaatacgcaat |
30124981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 30131161 - 30131068
Alignment:
| Q |
1 |
ttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagaga |
94 |
Q |
| |
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|||||||| |||||||||||||| ||||| || || |||| || |||||||||||| |||||| ||||||||||||||||| ||||||||| |
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| T |
30131161 |
ttgaatggggctattcattggctggtttataattatgagacaagaagggatgttattatagcctttaatttaaaggaaatgacaatgtcagaga |
30131068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 30120161 - 30120068
Alignment:
| Q |
1 |
ttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagaga |
94 |
Q |
| |
|
|||||||| ||||||||||| || || || || || |||| | ||| |||||||||||||||||||||||||||||| |||| | ||||||| |
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| T |
30120161 |
ttgaatggggctattcattgggtggttcataatcatgagaccaacatgaatgttattattgcctttgatttaaaggaaacgacaatatcagaga |
30120068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 30130967 - 30130934
Alignment:
| Q |
192 |
tacacttaagatatgggtgatgcaagaatacaca |
225 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
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|
| T |
30130967 |
tacagttaagatatgggtgatgcaagaatacaca |
30130934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 21426642 - 21426703
Alignment:
| Q |
48 |
ggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatg |
109 |
Q |
| |
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|||||||||||||||| ||||||||||||||| ||| ||||||||| ||||| ||||||| |
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| T |
21426642 |
ggatgttattattgcccttgatttaaaggaaacaacaatgtcagagatagctcttccagatg |
21426703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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