View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_192 (Length: 251)
Name: NF8810A_low_192
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_192 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold1075 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 17006016 - 17006250
Alignment:
| Q |
16 |
tggacatcaagttcttgaacaggttgaaaacataaaggtcatttttggtaaaaagccaaagaaagcagggttgggaaaaagaaaaggcaagaaacaacct |
115 |
Q |
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| T |
17006016 |
tggacatcaagttcttcaacaggttgaaaacataaaggtcatttttggtaaaaagccaaagaaagcagggttgggaaaaagaaaaggcaagaaacaacct |
17006115 |
T |
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| Q |
116 |
acacaaggtgaccctccaaaccagnnnnnnnnggacaggtaagaggcaatctacaaaagatgaccctccaatctggaagaagaaaagcatattctttgaa |
215 |
Q |
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| T |
17006116 |
acacaaggtgaccctccaaaccag-aaaaaaaggacaggcaagaggcaatctacaaaagatgaccctccaatctagaagaagaaaagcatattctttgaa |
17006214 |
T |
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| Q |
216 |
cttccatattggaaggacaatcttctgcgtcataat |
251 |
Q |
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| T |
17006215 |
cttccatattggaaggacaatcttttgcgtcataat |
17006250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1075 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: scaffold1075
Description:
Target: scaffold1075; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 47 - 251
Target Start/End: Complemental strand, 3050 - 2847
Alignment:
| Q |
47 |
ataaaggtcatttttggtaaaaagccaaagaaagcagggttgggaaaaagaaaaggcaagaaacaacctacacaaggtgaccctccaaaccagnnnnnnn |
146 |
Q |
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| T |
3050 |
ataaaggtcatttttggtaaaaagccaaagaaagcagggttgggaaaaagaaaaggcaagaaacaacctacacaaggtgaccctccaaaccagaaaaaaa |
2951 |
T |
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| Q |
147 |
nggacaggtaagaggcaatctacaaaagatgaccctccaatctggaagaagaaaagcatattctttgaacttccatattggaaggacaatcttctgcgtc |
246 |
Q |
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| T |
2950 |
-ggacaggcaagaggcaatctacaaaagatgaccctccaatctggaagaagaaaagcatattctttgaacttccatattggaaggacaatcttctgcgtc |
2852 |
T |
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| Q |
247 |
ataat |
251 |
Q |
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||||| |
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| T |
2851 |
ataat |
2847 |
T |
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