View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_199 (Length: 251)
Name: NF8810A_low_199
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_199 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 23 - 233
Target Start/End: Complemental strand, 3282323 - 3282113
Alignment:
| Q |
23 |
ttttggcatcatgagagtgctacatggaaacctaagaaaaattccatgtccatctagtattaagtattgaatcccaatgagattttgaaatgaatctggc |
122 |
Q |
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| T |
3282323 |
ttttggcatcatgagagtgctacatggaaacctaagaaaaattccatgtccatctagtattaagtattgaatcccaatgagattttgaaatgaatctggc |
3282224 |
T |
|
| Q |
123 |
aattcatctatggaagtttcttccaaatcaattcctactatgttttccatctttactaatatttctggaaatttcttaagcctataacaatatgaaagtt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3282223 |
aattcatctatggaagtttcttccaaatcaattcctactatgttttccatctttactaatatttctggaaatttcttaagcctataacaatatgaaagtt |
3282124 |
T |
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| Q |
223 |
caagtagttca |
233 |
Q |
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||||||||||| |
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| T |
3282123 |
caagtagttca |
3282113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 28096001 - 28096215
Alignment:
| Q |
18 |
gacatttttggcatcatgagagtgctacatggaaacctaagaaaaattccatgtccatctagtattaagtattgaatcccaatgagattttgaaatgaat |
117 |
Q |
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|||| ||||||||||| |||| |||||| ||| ||||||||||| |||| | |||||||| | ||| | | ||| ||| |||||||||||||||||| |
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| T |
28096001 |
gacaattttggcatcacgagaatgctacttggtaacctaagaaacattctaaatccatctaagagtaaatttcgaagcccgctgagattttgaaatgaat |
28096100 |
T |
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| Q |
118 |
ctggcaattcatctatggaagtttcttccaaatcaattcctactatgttttccatctttactaatatttctggaaatttcttaagcctataacaatatga |
217 |
Q |
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| T |
28096101 |
taggcaattcttttatggatgtctctttcaaaaaaatgctttctaggttttccatctttcctaatatttctggaaagttcctaagcctataacaatatga |
28096200 |
T |
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| Q |
218 |
aagttcaagtagttc |
232 |
Q |
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||| ||||||||| |
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| T |
28096201 |
cagtctaagtagttc |
28096215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 64 - 221
Target Start/End: Original strand, 26341059 - 26341216
Alignment:
| Q |
64 |
ttccatgtccatctagtattaagtattgaatcccaatgagattttgaaatgaatctggcaattcatctatggaagtttcttccaaatcaattcctactat |
163 |
Q |
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|||||||||| ||||||| ||| || |||| ||| ||||||||||||| ||||| |||||||| || ||||||||||| ||| ||| | | | || |
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| T |
26341059 |
ttccatgtccttctagtagtaaataatgaagtccagtgagattttgaaacgaatcaggcaattcttcaatggaagtttcacttaaagaaatgcttccaat |
26341158 |
T |
|
| Q |
164 |
gttttccatctttactaatatttctggaaatttcttaagcctataacaatatgaaagt |
221 |
Q |
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| T |
26341159 |
gttttccatctttcctaatatttctggaaagttcttaagactataacaaaatgaaagt |
26341216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 29828460 - 29828408
Alignment:
| Q |
168 |
tccatctttactaatatttctggaaatttcttaagcctataacaatatgaaag |
220 |
Q |
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||||||||| ||||||||||||||||| ||| ||| |||| |||||||||||| |
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| T |
29828460 |
tccatctttcctaatatttctggaaatctctcaagactattacaatatgaaag |
29828408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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