View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_2 (Length: 701)
Name: NF8810A_low_2
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 12 - 408
Target Start/End: Complemental strand, 37373309 - 37372905
Alignment:
| Q |
12 |
acatcaatgttgtagatctcgaagtattgatattttggtcacatttgtcacttttgtggctattgtgttattgtatgatattaattttgatgttgtgagc |
111 |
Q |
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| T |
37373309 |
acatcaatgttgtagatctcgaagtattgatattttggtcacatttgtcacttttgtggctattgtgttattgtatgatattaattttgatgttgtgagc |
37373210 |
T |
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| Q |
112 |
ttatctatggaccattcttttcatgtcaacaaattcttcataataaataacattttcaaagaaaatagtggaaataaaattcccttgaaggtggaaataa |
211 |
Q |
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| T |
37373209 |
ttatctatggaccattcttttcatgtcaacaaattcttcataataaataacattttcaaagaaaatagtggaaataaaattcccttgaaggtggaaataa |
37373110 |
T |
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| Q |
212 |
atctacgtgtaaactgttgataaacatttctcttaaagtaacttatcagaataatatggagtaaatgttaatcaagcatcnnnnnnnaaaaagcatttag |
311 |
Q |
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| T |
37373109 |
atctacgtgtaaactgttgataaacatttctcttaatgtaactcatcagaataatatggagtaaatgttaatcaagcatatttttttaaaaagcatctag |
37373010 |
T |
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| Q |
312 |
gaatacagatttaatcaaaagttatttcc---------tctaataaacttnnnnnnnnntcctttatgtttagtttttctatccatgccaacaatcaatt |
402 |
Q |
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| T |
37373009 |
gaatacagatttaatcaaaagttatttccgataataaatttaataaactt-aaaaaaaatcctttatgtttagtttttctatccatgccaacaatcaatt |
37372911 |
T |
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| Q |
403 |
atcaaa |
408 |
Q |
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| T |
37372910 |
atcaaa |
37372905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 400 - 544
Target Start/End: Complemental strand, 37372435 - 37372290
Alignment:
| Q |
400 |
attatcaaatttcattctattaatttagattggttacatgaatcaaatgacactataatattatttcatatatcacatcattctcgaactcatcaatctc |
499 |
Q |
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| T |
37372435 |
attatcaaattttattctattaagtgagattggttacatgaatcaaataacactataatattatgtcatatatcacatcactctcgaactcatcaatctc |
37372336 |
T |
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| Q |
500 |
taaaa-ttttataatattttctcttgtagttttcctaaatctccac |
544 |
Q |
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| T |
37372335 |
taaaacttttataataatttctcttgtagttttcctaaatctccac |
37372290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 563 - 697
Target Start/End: Complemental strand, 37372304 - 37372170
Alignment:
| Q |
563 |
ttcctaaatctccacttgccactgttaatttgactaccatccatctcatttatttccttaatgcaaaatttataggttttgtatgtacataacattattt |
662 |
Q |
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| T |
37372304 |
ttcctaaatctccacttgccactagtaatttgacaaccatccatctcatttatttccttaatgcaaaatttataggtcttgtatgtacataacattattt |
37372205 |
T |
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| Q |
663 |
tggtgcggtcttgagtgatgtccatctcattgtta |
697 |
Q |
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|||||||||||||||||| |||||| |||| |||| |
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| T |
37372204 |
tggtgcggtcttgagtgaggtccatgtcatggtta |
37372170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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