View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8810A_low_20 (Length: 436)

Name: NF8810A_low_20
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8810A_low_20
NF8810A_low_20
[»] chr3 (6 HSPs)
chr3 (10-436)||(19199002-19199429)
chr3 (31-376)||(6777702-6778048)
chr3 (106-367)||(1596237-1596499)
chr3 (106-367)||(34437781-34438042)
chr3 (380-427)||(34437674-34437721)
chr3 (111-251)||(21565915-21566054)
[»] chr1 (8 HSPs)
chr1 (10-372)||(43782700-43783063)
chr1 (106-367)||(48999782-49000044)
chr1 (10-372)||(45152536-45152899)
chr1 (106-291)||(40553596-40553781)
chr1 (10-376)||(3375894-3376260)
chr1 (106-291)||(33297214-33297399)
chr1 (380-432)||(45152954-45153005)
chr1 (378-428)||(3375795-3375845)
[»] scaffold0018 (1 HSPs)
scaffold0018 (23-372)||(180324-180674)
[»] chr7 (3 HSPs)
chr7 (10-370)||(12627280-12627641)
chr7 (129-377)||(1326840-1327089)
chr7 (106-291)||(38457439-38457624)
[»] chr2 (4 HSPs)
chr2 (31-376)||(31116886-31117232)
chr2 (106-270)||(28035602-28035766)
chr2 (380-427)||(28035925-28035972)
chr2 (380-428)||(31116787-31116835)
[»] scaffold0251 (2 HSPs)
scaffold0251 (31-371)||(16977-17321)
scaffold0251 (380-427)||(16875-16922)
[»] chr4 (11 HSPs)
chr4 (36-367)||(42705139-42705470)
chr4 (160-282)||(25147344-25147466)
chr4 (106-291)||(39465305-39465486)
chr4 (106-244)||(3680780-3680918)
chr4 (108-257)||(32307880-32308029)
chr4 (372-427)||(3681088-3681143)
chr4 (380-427)||(25147612-25147659)
chr4 (380-427)||(32305590-32305637)
chr4 (380-427)||(39465623-39465670)
chr4 (254-291)||(32305774-32305811)
chr4 (380-424)||(42705035-42705079)
[»] chr5 (11 HSPs)
chr5 (187-370)||(26653528-26653712)
chr5 (187-370)||(26925113-26925297)
chr5 (111-367)||(13274043-13274300)
chr5 (36-291)||(2742882-2743137)
chr5 (73-172)||(26648609-26648708)
chr5 (73-172)||(26920194-26920293)
chr5 (235-291)||(21101423-21101479)
chr5 (162-283)||(24209211-24209332)
chr5 (380-436)||(26653769-26653825)
chr5 (380-436)||(26925354-26925410)
chr5 (380-435)||(21101616-21101672)
[»] chr8 (3 HSPs)
chr8 (118-376)||(37227721-37227980)
chr8 (106-306)||(14096646-14096846)
chr8 (380-427)||(37227623-37227670)
[»] scaffold0408 (1 HSPs)
scaffold0408 (106-306)||(6988-7188)
[»] chr6 (3 HSPs)
chr6 (106-291)||(6285814-6285999)
chr6 (187-304)||(35014337-35014454)
chr6 (162-252)||(2029728-2029818)
[»] scaffold0007 (2 HSPs)
scaffold0007 (220-291)||(257345-257416)
scaffold0007 (106-180)||(274099-274173)
[»] scaffold0010 (1 HSPs)
scaffold0010 (162-260)||(32353-32451)


Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 10 - 436
Target Start/End: Original strand, 19199002 - 19199429
Alignment:
Q  10 atgagtacgaacatgctctagccccacttgtgagtcgatggaaacctcctaagggatttaatgatcctggacacaacatatatgacattgttttagtgga 109  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||  || ||||||||||| ||||| ||||| || ||||||    
T  19199002 atgagtacgaacatgttcttgccccgcttgtgagtcgatggaaacctcctaagggatttaatagtcttggacacaacagatatgccattgattcagtgga 19199101  T
Q  110 ccattctcatgtcatctggaggtcggaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatac 209  Q
    |||||||||||||||||||| |||| || ||||||||| |||||||||||||||| || |||||||||||| |||  |||||||||||||||||||||||    
T  19199102 ccattctcatgtcatctggatgtcgtacgagagacaacgagacattacgtccttttagaacatatgctagtgctccggatggatcatggccggcaaatac 19199201  T
Q  210 aagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcagggg 309  Q
    ||||||||||||||||||||| |||||||| ||||||||||| |||||||| | ||| ||||||||||||||||| ||||||||||||||||||||||||    
T  19199202 aagagggtatgtcacttgccagagtgggttcttaggcagtactagtatgtccaaactgttcccaggcctcctacaaacattgggcctcttacggcagggg 19199301  T
Q  310 acgtagctatggccttcgcagagttt-ctctacatgccctcagccagcaggagaggggtgatctagttttgtagagtatcacatcctattatgaacctcc 408  Q
    |||| | ||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||    
T  19199302 acgtggttatggccttcgcagagtttgctctacatgtcctcagccagtaggagaggggtgatctatttttgtagagtatcacatcctattatgaaccccc 19199401  T
Q  409 atgcgtccattcctgactacacagttga 436  Q
     |||||||||||||||||||||||||||    
T  19199402 ctgcgtccattcctgactacacagttga 19199429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 31 - 376
Target Start/End: Original strand, 6777702 - 6778048
Alignment:
Q  31 ccccacttgtgagtcgatggaaacctcctaagggatttaatgatcctggacacaacatatatgacattgttttagtggaccattctcatgtcatctggag 130  Q
    ||||||||||||||| |||||||||||| | ||| |||  | ||||||||||| ||| |  || ||| | ||   |||| ||||| ||||||| ||||||    
T  6777702 ccccacttgtgagtcaatggaaacctccaaggggcttttctaatcctggacactacagagctgccatcgattcgttggaacattcacatgtcacctggag 6777801  T
Q  131 gtcggaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgcca 230  Q
    | || || |||||| || | |||| ||| ||| | |||||||||||| || |||  ||||||||||||||| |||  ||| || |||  ||||||||| |    
T  6777802 gccgtacgagagacgacgacacatcacgccctataaggacatatgctggtgctccggatggatcatggccgacaacgacaggatggtccgtcacttgcta 6777901  T
Q  231 tagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcag 330  Q
     || ||||| |||||||||||| ||||||| |||||||||  ||| ||||||||||||||| || | || ||||||  ||||| ||   ||||||| | |    
T  6777902 gagagggttcttaggcagtacgggtatgtccagactattctgagggctcctacagacattgagcttattgcggcagatgacgtggcccaggccttcacgg 6778001  T
Q  331 agttt-ctctacatgccctcagccagcaggagaggggtgatctagtt 376  Q
    ||||| ||||||||| ||||||||| ||| |||||||||||| ||||    
T  6778002 agtttgctctacatgtcctcagccatcagcagaggggtgatccagtt 6778048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 106 - 367
Target Start/End: Complemental strand, 1596499 - 1596237
Alignment:
Q  106 tggaccattctcatgtcatctggaggtcggaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaa 205  Q
    |||||| ||| ||||||| |||||||||| || |||||| || | |||| ||| |||||||||||||||||| ||||||  |||||||||||||| |||     
T  1596499 tggaccgttcacatgtcacctggaggtcgtacaagagacgacgacacatcacgccctttcaggacatatgctggtactccggatggatcatggccagcag 1596400  T
Q  206 atacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggca 305  Q
      ||| || |||  ||||||||||| || ||||| |||||||||||  ||||||| |||||||||  ||| ||||||||||||||| || | || |||||    
T  1596399 cgacaggatggtccgtcacttgccaaagcgggttcttaggcagtacaggtatgtccagactattctgagggctcctacagacattgagcttattgcggca 1596300  T
Q  306 ggggacgtagctatggccttcgcagagttt-ctctacatgccctcagccagcaggagaggggt 367  Q
    |  ||||| ||   |||||||   |||||| ||||||||| ||||| ||| ||| ||||||||    
T  1596299 gatgacgtggcccaggccttcatggagtttgctctacatgtcctcacccatcagcagaggggt 1596237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 106 - 367
Target Start/End: Complemental strand, 34438042 - 34437781
Alignment:
Q  106 tggaccattctcatgtcatctggaggtcggaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaa 205  Q
    |||||||||| ||||||| ||||||| || || |||||| || | |||| ||| |||||||||||||||||| ||||||  |||||||||||| ||| |     
T  34438042 tggaccattcacatgtcacctggaggccgtacgagagacgacgacacatcacgccctttcaggacatatgctggtactccggatggatcatggtcggtag 34437943  T
Q  206 atacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggca 305  Q
       || || |||  |||| || ||| || ||||| |||||||||||| ||||||  |||||||||||||| ||||||| ||||||| || | || ||||     
T  34437942 tggcaggatggtccgtcaatttccagagcgggttcttaggcagtacgggtatgtacagactattcccagggctcctactgacattgagcttattgcggcg 34437843  T
Q  306 ggggacgtagctatggccttcgcagagttt-ctctacatgccctcagccagcaggagaggggt 367  Q
    |  ||||| || | || |||| | |||||| ||||||||| ||||||||| ||||| ||||||    
T  34437842 gatgacgtggcca-ggtcttcacggagtttgctctacatgtcctcagccatcaggataggggt 34437781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 380 - 427
Target Start/End: Complemental strand, 34437721 - 34437674
Alignment:
Q  380 tagagtatcacatcctattatgaacctccatgcgtccattcctgacta 427  Q
    ||||||||||||||||||| ||||||||| |||| |||||||||||||    
T  34437721 tagagtatcacatcctattgtgaacctccctgcgcccattcctgacta 34437674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 251
Target Start/End: Original strand, 21565915 - 21566054
Alignment:
Q  111 cattctcatgtcatctggaggtcggaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaataca 210  Q
    |||| |||||||| |||||||||| || || | | || ||||||  || | ||||||||| | |||| ||||||| ||||||||||||||| |||| | |    
T  21565915 cattgtcatgtcacctggaggtcgtacgagcgccgacgagacatggcgccttttcaggacgtgtgct-gtactctggatggatcatggccgacaaacaaa 21566013  T
Q  211 agagggtatgtcacttgccatagtgggttattaggcagtac 251  Q
    ||| ||| |||||||||||  || ||||| | |||||||||    
T  21566014 agatggtgtgtcacttgcccgagcgggttctgaggcagtac 21566054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 10 - 372
Target Start/End: Complemental strand, 43783063 - 43782700
Alignment:
Q  10 atgagtacgaacatgctctagccccacttgtgagtcgatggaaacctcctaagggatttaatgatcctggacacaacatatatgacattgttttagtgga 109  Q
    |||| ||||| | |||||| ||||| ||||||  || |||||||||||| | ||| |||  ||||||||||||| ||| | ||| ||||| ||   ||||    
T  43783063 atgattacgagcctgctcttgccccgcttgtggatcaatggaaacctcccaggggcttttttgatcctggacactacagagatgtcattgattcgatgga 43782964  T
Q  110 ccattctcatgtcatctggaggtcggaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatac 209  Q
    ||||||||||||||||||||||||  || |||||  || |||||||||| ||||||| |||||||||||||||||| |||||||||||| ||||||| ||    
T  43782963 ccattctcatgtcatctggaggtcatacgagagatgacgagacattacgccctttcacgacatatgctagtactctggatggatcatggtcggcaaagac 43782864  T
Q  210 aagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcagggg 309  Q
    | |||||| |||||||||||| || | ||| ||||||| |||||||||||| ||||||| |||| ||||||||||||||||||||||||| || || |||    
T  43782863 atgagggtctgtcacttgccagagcgagttcttaggcaatacgagtatgtccagactatacccatgcctcctacagacattgggcctcttgcgtcaaggg 43782764  T
Q  310 acgtagctatggccttcgcagagttt-ctctacatgccctcagccagcaggagaggggtgatct 372  Q
    |||| |||||||||| |   |||||| ||||||||| |||||||||||||||||||||||||||    
T  43782763 acgtggctatggcctccatggagtttgctctacatgtcctcagccagcaggagaggggtgatct 43782700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 106 - 367
Target Start/End: Original strand, 48999782 - 49000044
Alignment:
Q  106 tggaccattctcatgtcatctggaggtcggaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaa 205  Q
    |||||||||| ||||||| |||||||||| || |||||| || | |||| ||| |||||||||||||||||| ||||||  |||||||||||||||||||    
T  48999782 tggaccattcacatgtcacctggaggtcgtacgagagacgacgacacatcacgccctttcaggacatatgctggtactccggatggatcatggccggcaa 48999881  T
Q  206 atacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggca 305  Q
      ||| || |||  ||||||||||| || ||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||| || | || ||||     
T  48999882 cgacaggatggtccgtcacttgccagagcgggttcttaggcagtacgggtatgtctagactattcccagggctcctacagacattgagcttattgcggcg 48999981  T
Q  306 ggggacgtagctatggccttcgcagagttt-ctctacatgccctcagccagcaggagaggggt 367  Q
    |  ||||| |||  ||||||| | |||||| ||||||||| ||||||||| ||||| ||||||    
T  48999982 gatgacgtggctcaggccttcacggagtttgctctacatgtcctcagccatcaggataggggt 49000044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 10 - 372
Target Start/End: Original strand, 45152536 - 45152899
Alignment:
Q  10 atgagtacgaacatgctctagccccacttgtgagtcgatggaaacctcctaagggatttaatgatcctggacacaacatatatgacattgttttagtgga 109  Q
    |||||||||| | ||||||  |||| |||||||||| |||||||||| | |  || |||| |||||| |||||| ||| | ||| ||||| ||   ||||    
T  45152536 atgagtacgaccctgctcttaccccgcttgtgagtcaatggaaacctaccagaggttttactgatcccggacactacagacatgtcattgattcgttgga 45152635  T
Q  110 ccattctcatgtcatctggaggtcggaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatac 209  Q
    ||||| |||||||||||||| |||| |  |||||| |  | |||| ||| |||||||||||||||| | |||||| ||||||||||||||||||||| ||    
T  45152636 ccattttcatgtcatctggatgtcgtatgagagacgatgacacatcacgccctttcaggacatatgttggtactccagatggatcatggccggcaaagac 45152735  T
Q  210 aagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcagggg 309  Q
    | | ||||   | |||||| | || ||||| ||||||||| || ||||||| ||||| |||| |||| |||||||||||||||||||||| || ||| ||    
T  45152736 atgcgggttcattacttgctagagcgggttcttaggcagttcgggtatgtccagactgttcctaggcatcctacagacattgggcctcttgcgacagcgg 45152835  T
Q  310 acgtagctatggccttcgcagagttt-ctctacatgccctcagccagcaggagaggggtgatct 372  Q
    | || ||||||||||||   |||||| |||||||||  |||||||| | ||||| |||||||||    
T  45152836 atgtggctatggccttcatggagtttgctctacatgttctcagccaactggagatgggtgatct 45152899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 106 - 291
Target Start/End: Complemental strand, 40553781 - 40553596
Alignment:
Q  106 tggaccattctcatgtcatctggaggtcggaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaa 205  Q
    |||||||||| |||||||  ||||||||| || |||||| || | |||| ||| ||||||| |||||||||| ||||||  ||||||||||||||||||     
T  40553781 tggaccattcacatgtcacttggaggtcgtacgagagacgacgacacatcacgccctttcatgacatatgctggtactccggatggatcatggccggcag 40553682  T
Q  206 atacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattg 291  Q
      ||| || |||  ||||||||||| || ||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  40553681 cgacaggatggtccgtcacttgccagagcgggttcttaggcagtacgagtatgtccagactattcccagggctcctacagacattg 40553596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 10 - 376
Target Start/End: Complemental strand, 3376260 - 3375894
Alignment:
Q  10 atgagtacgaacatgctctagccccacttgtgagtcgatggaaacctcctaagggatttaatgatcctggacacaacatatatgacattgttttagtgga 109  Q
    |||||| ||| | |||||| ||||| ||||||  || |||||||||||| |  || |||  ||||||||||||| |||   ||| || || || | ||||    
T  3376260 atgagtgcgaccttgctcttgccccgcttgtggatcaatggaaacctcccagtggcttttctgatcctggacaccacagtgatgccaatgattcattgga 3376161  T
Q  110 ccattctcatgtcatctggaggtcggaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatac 209  Q
     |||||||||||||| |||||| || || |||||| || ||||||  || |||||||||||||||  | ||||||  |||||||||||||||| | | ||    
T  3376160 gcattctcatgtcatttggaggccgtacgagagacgacgagacatggcgccctttcaggacatattttggtactccggatggatcatggccggtagagac 3376061  T
Q  210 aagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcagggg 309  Q
    | || |||  ||||||||||| || ||||| ||||||| |||  ||||||| |||||  ||||||  |||||||||| ||||||||||||  | ||| ||    
T  3376060 aggatggtccgtcacttgccagagcgggttcttaggcaatacatgtatgtccagactggtcccagagctcctacagatattgggcctcttgtgccagagg 3375961  T
Q  310 acgtagctatggccttcgcagag-tttctctacatgccctcagccagcaggagaggggtgatctagtt 376  Q
    | || |||||| |||||   ||| |||||||||||| ||||||||||||||||| |||||||||||||    
T  3375960 aggtggctatgaccttcatggagttttctctacatgtcctcagccagcaggaga-gggtgatctagtt 3375894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 106 - 291
Target Start/End: Complemental strand, 33297399 - 33297214
Alignment:
Q  106 tggaccattctcatgtcatctggaggtcggaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaa 205  Q
    |||||||||| ||||||| ||||||| || || |||||| || | |||| ||| | |||||||||||||||| ||||||  ||||||||||||||| ||     
T  33297399 tggaccattcacatgtcacctggaggccgtacgagagacgacgacacatcacgccatttcaggacatatgctggtactccggatggatcatggccgacag 33297300  T
Q  206 atacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattg 291  Q
      ||| || |||  ||||||||||| || ||||| |||||||||||| ||||| | |||||||||||||| |||||||||||||||    
T  33297299 cgacaggatggtccgtcacttgccagagcgggttcttaggcagtacgggtatgaccagactattcccagggctcctacagacattg 33297214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 380 - 432
Target Start/End: Original strand, 45152954 - 45153005
Alignment:
Q  380 tagagtatcacatcctattatgaacctccatgcgtccattcctgactacacag 432  Q
    ||||||||||||||||||| |||||| || |||| ||||||||||||||||||    
T  45152954 tagagtatcacatcctattgtgaacc-ccctgcggccattcctgactacacag 45153005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 428
Target Start/End: Complemental strand, 3375845 - 3375795
Alignment:
Q  378 tgtagagtatcacatcctattatgaacctccatgcgtccattcctgactac 428  Q
    ||||||||| ||||||||||| |||||| || |||| ||||||||||||||    
T  3375845 tgtagagtagcacatcctattgtgaacccccctgcggccattcctgactac 3375795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 151; Significance: 9e-80; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 23 - 372
Target Start/End: Complemental strand, 180674 - 180324
Alignment:
Q  23 tgctctagccccacttgtgagtcgatggaaacctcctaagggatttaatgatcctggacacaacatatatgacattgttttagtggaccattctcatgtc 122  Q
    |||||| ||||| |||||||||| |||||||| ||| |||||||||| ||||| ||||||| |||||  || ||||| |||| |||||  ||||||||||    
T  180674 tgctcttgccccgcttgtgagtcaatggaaacatcccaagggatttagtgatcttggacactacataggtgtcattgatttattggacagttctcatgtc 180575  T
Q  123 atctggaggtcggaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtc 222  Q
    || |||||   | || |||||| || |||||||| | |||||||||||||||| | ||||||  ||||||||||||||| |||| ||| |||||| ||||    
T  180574 atatggagactgtacgagagacgacgagacattatgccctttcaggacatatgttggtactccggatggatcatggccgccaaagacaggagggtctgtc 180475  T
Q  223 acttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggc 322  Q
    |||||||| || ||||| |||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||  |||||||||| | |||||| |    
T  180474 acttgccagagcgggttcttaggcagtacgggtatgtctagactgttcccaggcctcctacaaacattgggcctcttgtggcaggggacatggctatgac 180375  T
Q  323 cttcgcagagttt-ctctacatgccctcagccagcaggagaggggtgatct 372  Q
    ||||   |||||| ||||||||| |||||||||||||||||||||||||||    
T  180374 cttcatggagtttgctctacatgtcctcagccagcaggagaggggtgatct 180324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 7e-53; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 10 - 370
Target Start/End: Original strand, 12627280 - 12627641
Alignment:
Q  10 atgagtacgaacatgctctagccccacttgtgagtcgatggaaacctcctaagggatttaatgatcctggacacaacatatatgacattgttttagtgga 109  Q
    |||||||||| | |||||| ||||| ||||||  || || ||||||||| | |||||||  ||||||| ||||| ||| | ||| ||||| || | ||||    
T  12627280 atgagtacgaccctgctcttgccccgcttgtggatcaatcgaaacctcccaggggattttctgatcctagacactacagagatgtcattgattcattgga 12627379  T
Q  110 ccattctcatgtcatctggaggtcggaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatac 209  Q
     ||||||||||||||||| |||||| || || ||  || | |||| ||| ||||| |||||||||| | |||||||||||||||||||||||||||| ||    
T  12627380 gcattctcatgtcatctgaaggtcgtacgagtgatgacgacacatgacgcccttttaggacatatggtggtactctagatggatcatggccggcaaagac 12627479  T
Q  210 aagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcagggg 309  Q
    | || |||  ||||||||||| |||||||| ||| |||||||  ||||| | ||||| |||||||||||||||||||||||||| || || || ||| ||    
T  12627480 aggatggttcgtcacttgccagagtgggttcttatgcagtacaggtatgcccagactgttcccaggcctcctacagacattgggactgttgcgccagagg 12627579  T
Q  310 acgtagctatggccttcgcagag-tttctctacatgccctcagccagcaggagaggggtgat 370  Q
      || ||||||||||||   ||| |||||||||||| ||||||||| ||  |||||||||||    
T  12627580 cggtggctatggccttcatggagttttctctacatgtcctcagccaacaacagaggggtgat 12627641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 129 - 377
Target Start/End: Complemental strand, 1327089 - 1326840
Alignment:
Q  129 aggtcggaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgc 228  Q
    |||||| || |||||| || |||||||||  |||||||||||||||| | ||||||  |||||||||||||| ||| | ||||||||||  |||||||||    
T  1327089 aggtcgtacgagagacgacgagacattacaccctttcaggacatatgttggtactccggatggatcatggcctgcagagacaagagggtccgtcacttgc 1326990  T
Q  229 catagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgc 328  Q
    || |  ||| | |||||||||| | ||||||| | | | ||| || ||||||||||||||||||||||||  || ||||||| || | || |||||||      
T  1326989 cagaacgggattttaggcagtatgggtatgtccaaattgttcacatgcctcctacagacattgggcctctggcgccaggggaggtggttacggccttcat 1326890  T
Q  329 agagttt-ctctacatgccctcagccagcaggagaggggtgatctagttt 377  Q
     |||||| ||||||||| ||||||||| ||||||||||||||||| ||||    
T  1326889 ggagtttgctctacatgtcctcagccaacaggagaggggtgatctggttt 1326840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 106 - 291
Target Start/End: Original strand, 38457439 - 38457624
Alignment:
Q  106 tggaccattctcatgtcatctggaggtcggaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaa 205  Q
    |||||||||| ||||||| ||||||| || || |||||| || | |||| | | |||||||||||||||||| ||||||  ||||||||||||||||||     
T  38457439 tggaccattcacatgtcacctggaggacgtacgagagacgacgacacatcatgccctttcaggacatatgctggtactccggatggatcatggccggcag 38457538  T
Q  206 atacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattg 291  Q
      ||| || |||  ||||||||||| ||| |||| |||||||||||| |||| |  |||||||||||||  |||||||||||||||    
T  38457539 cgacatgatggtccgtcacttgccagagttggttcttaggcagtacgggtatattcagactattcccagcgctcctacagacattg 38457624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 31 - 376
Target Start/End: Complemental strand, 31117232 - 31116886
Alignment:
Q  31 ccccacttgtgagtcgatggaaacctcctaagggatttaatgatcctggacacaacatatatgacattgttttagtggaccattctcatgtcatctggag 130  Q
    |||| |||||||||| |||||||||||| | ||| |||  | ||||||||||| ||| | ||| ||||| |||  |||||||||||  ||||||||||||    
T  31117232 ccccgcttgtgagtcaatggaaacctcccaggggcttttctaatcctggacactacagagatgccattgatttgttggaccattcttgtgtcatctggag 31117133  T
Q  131 gtcggaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgcca 230  Q
    | || || |||||  || |  ||| |   |||||||||| ||||||| |||||   ||||||||||||||| || | | | || ||| ||||||||||||    
T  31117132 gccgtacgagagaagacgacgcatcagaccctttcaggatatatgctggtacttcggatggatcatggccgacagagataggatggtctgtcacttgcca 31117033  T
Q  231 tagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcag 330  Q
     ||| |||| |||||||||||| ||||||| ||||    |||||||||||||||||||||  ||||||||||||||  ||||| ||   | |||||  ||    
T  31117032 gagtcggttcttaggcagtacgggtatgtccagacacggcccaggcctcctacagacattaagcctcttacggcagatgacgtggcccagaccttcatag 31116933  T
Q  331 agttt-ctctacatgccctcagccagcaggagaggggtgatctagtt 376  Q
    ||||| ||||||||| ||||||||| ||| |||||||| ||| ||||    
T  31116932 agtttgctctacatgtcctcagccatcagcagaggggttatccagtt 31116886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 106 - 270
Target Start/End: Original strand, 28035602 - 28035766
Alignment:
Q  106 tggaccattctcatgtcatctggaggtcggaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaa 205  Q
    |||||||||| ||||||| ||||||| || || |||||| |||| |||| ||| ||||||| |||||||||| ||||||  ||| ||||||||||||||     
T  28035602 tggaccattcacatgtcacctggaggccgtacgagagacgacaacacatcacgccctttcaagacatatgctggtactccggatagatcatggccggcag 28035701  T
Q  206 atacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattc 270  Q
      ||| || |||  ||||||||| | || ||||| |||||||||| | ||||||| |||||||||    
T  28035702 cgacatgatggtccgtcacttgctagagcgggttcttaggcagtaggggtatgtccagactattc 28035766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 380 - 427
Target Start/End: Original strand, 28035925 - 28035972
Alignment:
Q  380 tagagtatcacatcctattatgaacctccatgcgtccattcctgacta 427  Q
    ||||||||||||||||||| |||||| ||||||| |||||||||||||    
T  28035925 tagagtatcacatcctattgtgaacccccatgcggccattcctgacta 28035972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 380 - 428
Target Start/End: Complemental strand, 31116835 - 31116787
Alignment:
Q  380 tagagtatcacatcctattatgaacctccatgcgtccattcctgactac 428  Q
    ||||||||||||||||||| |||||| || |||| ||||||||||||||    
T  31116835 tagagtatcacatcctattgtgaacccccctgcggccattcctgactac 31116787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 31 - 371
Target Start/End: Complemental strand, 17321 - 16977
Alignment:
Q  31 ccccacttgtgagtcgatggaaacctcctaagggatttaatgatcctggacacaacatatatgacattgttttagtggaccattctcatgtcatctggag 130  Q
    |||| |||||||||| |||||||||||| | ||| |||  | ||||||||||| ||| |  || ||||| |||  |||||||||| |||||||  |||||    
T  17321 ccccgcttgtgagtcaatggaaacctcccaggggcttttctaatcctggacactacagagctgccattgatttgttggaccattcacatgtcacttggag 17222  T
Q  131 gtcggaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgcca 230  Q
    | || || |||||| || | |||| ||  |||||||||||||||||| ||||||| |||||||||||||| |||   ||| || |||  ||||||| |||    
T  17221 gccgtacgagagacgacgacacatcacaccctttcaggacatatgctggtactctggatggatcatggccagcagcgacaggatggtccgtcactttcca 17122  T
Q  231 tagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtag-cta--tggccttcg 327  Q
     || ||||| ||||| |||||| ||||||| |||||||||| ||| ||||||||||||||  || | || ||||||  ||| | | |||  || |||||     
T  17121 gagcgggttgttaggtagtacgggtatgtccagactattccgagggctcctacagacatttagcttattgcggcagatgacatggcctaggtgcccttca 17022  T
Q  328 cagagttt-ctctacatgccctcagccagcaggagaggggtgatc 371  Q
    |||||||| ||||||||| ||||||||| ||| ||||||||||||    
T  17021 cagagtttgctctacatgtcctcagccatcagtagaggggtgatc 16977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 427
Target Start/End: Complemental strand, 16922 - 16875
Alignment:
Q  380 tagagtatcacatcctattatgaacctccatgcgtccattcctgacta 427  Q
    ||||||||||||||||||| |||||| || |||| |||||||||||||    
T  16922 tagagtatcacatcctattgtgaacccccctgcggccattcctgacta 16875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 36 - 367
Target Start/End: Complemental strand, 42705470 - 42705139
Alignment:
Q  36 cttgtgagtcgatggaaacctcctaagggatttaatgatcctggacacaacatatatgacattgttttagtggaccattctcatgtcatctggaggtcgg 135  Q
    ||||||| || |||||||||||| | ||||||| || ||||| ||||| ||| |  || ||| | |||  |||||||||| ||||||| ||||||| ||     
T  42705470 cttgtgattcaatggaaacctcc-aggggattttataatcctcgacactacagagctgccatcgatttgttggaccattcacatgtcacctggaggccgt 42705372  T
Q  136 accagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtg 235  Q
    || |||||| || | |||| ||| |||||||||||||||| | ||||||  |||||||||||| |||||   ||| || |||  ||||||||||| || |    
T  42705371 acgagagacgacgacacatcacgccctttcaggacatatgttggtactccggatggatcatgggcggcagcgacatgaaggtccgtcacttgccagagcg 42705272  T
Q  236 ggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagagttt 335  Q
    |||| |||||||||||| | ||||| | |||||||||||| ||||||||||||||| || | || || |||  ||||| ||   ||||||| | ||||||    
T  42705271 ggttcttaggcagtacgggcatgtccatactattcccagggctcctacagacattgagcttattgcgacagatgacgtggcccaggccttcacggagttt 42705172  T
Q  336 -ctctacatgccctcagccagcaggagaggggt 367  Q
     ||||||||| ||||||||| ||| ||||||||    
T  42705171 gctctacatgtcctcagccatcagcagaggggt 42705139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 160 - 282
Target Start/End: Original strand, 25147344 - 25147466
Alignment:
Q  160 cctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgt 259  Q
    |||||||||||||||||| ||||||  ||||||||||||||||||   ||| || ||| |||||||||||| || ||||| |||||||||||| ||||||    
T  25147344 cctttcaggacatatgctggtactccggatggatcatggccggcagcgacaggatggtctgtcacttgccagagcgggttcttaggcagtacgggtatgt 25147443  T
Q  260 ctagactattcccaggcctccta 282  Q
    | |||||||||||| | ||||||    
T  25147444 ccagactattcccatggctccta 25147466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 106 - 291
Target Start/End: Original strand, 39465305 - 39465486
Alignment:
Q  106 tggaccattctcatgtcatctggaggtcggaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaa 205  Q
    |||||||||| ||||||| ||||||| || || |||||| ||  ||||| ||| |||||||||||||||||||||||||  ||||||||||||||||||     
T  39465305 tggaccattcacatgtcacctggaggccgtacgagagacgac--gacatcacgccctttcaggacatatgctagtactccggatggatcatggccggcag 39465402  T
Q  206 atacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattg 291  Q
      ||| || |||  || |||||||| ||  |||| |||||||||| | |||||||  |||||||| |||| || ||||||||||||    
T  39465403 cgacaggatggtccgtaacttgccagagccggttcttaggcagtatgggtatgtc--gactattctcagggcttctacagacattg 39465486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 106 - 244
Target Start/End: Original strand, 3680780 - 3680918
Alignment:
Q  106 tggaccattctcatgtcatctggaggtcggaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaa 205  Q
    |||||||||| ||||||| ||||||| || || |||||| || | |||| ||| ||||| |||||| || |||||||||  ||||||||||||||||||     
T  3680780 tggaccattcacatgtcacctggaggccgtacgagagacgacgacacatcacgccctttgaggacacatactagtactccggatggatcatggccggcag 3680879  T
Q  206 atacaagagggtatgtcacttgccatagtgggttattag 244  Q
      |||||| |||  ||||||||||| || ||||| ||||    
T  3680880 cgacaagatggtccgtcacttgccagagcgggttcttag 3680918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 108 - 257
Target Start/End: Complemental strand, 32308029 - 32307880
Alignment:
Q  108 gaccattctcatgtcatctggaggtcggaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaat 207  Q
    |||||||| ||||||| ||||| |||| || |||||| || | |||| ||| ||||| |||||||||||| ||||||  ||||||||||||||| ||       
T  32308029 gaccattcacatgtcacctggaagtcgtacgagagacgacgacacatcacgccctttgaggacatatgctggtactccggatggatcatggccgacagcg 32307930  T
Q  208 acaagagggtatgtcacttgccatagtgggttattaggcagtacgagtat 257  Q
    ||| || |||  ||||||||||  || ||||| |||||||||||| ||||    
T  32307929 acaggatggtccgtcacttgcctgagcgggttcttaggcagtacgggtat 32307880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 427
Target Start/End: Original strand, 3681088 - 3681143
Alignment:
Q  372 tagttttgtagagtatcacatcctattatgaacctccatgcgtccattcctgacta 427  Q
    ||||||| |||||||||||||||||||||||||| || |||| |||||||||||||    
T  3681088 tagttttttagagtatcacatcctattatgaacccccctgcgaccattcctgacta 3681143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 427
Target Start/End: Original strand, 25147612 - 25147659
Alignment:
Q  380 tagagtatcacatcctattatgaacctccatgcgtccattcctgacta 427  Q
    ||||||||||||||||||| |||||| || |||| |||||||||||||    
T  25147612 tagagtatcacatcctattgtgaacccccctgcggccattcctgacta 25147659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 427
Target Start/End: Complemental strand, 32305637 - 32305590
Alignment:
Q  380 tagagtatcacatcctattatgaacctccatgcgtccattcctgacta 427  Q
    ||||||||||||||||||| |||||| ||||| | |||||||||||||    
T  32305637 tagagtatcacatcctattgtgaacccccatgtggccattcctgacta 32305590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 427
Target Start/End: Original strand, 39465623 - 39465670
Alignment:
Q  380 tagagtatcacatcctattatgaacctccatgcgtccattcctgacta 427  Q
    ||||||||||||||||||| |||||| || |||| |||||||||||||    
T  39465623 tagagtatcacatcctattgtgaacccccctgcggccattcctgacta 39465670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 291
Target Start/End: Complemental strand, 32305811 - 32305774
Alignment:
Q  254 gtatgtctagactattcccaggcctcctacagacattg 291  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  32305811 gtatgtccagactattcccagggctcctacagacattg 32305774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 424
Target Start/End: Complemental strand, 42705079 - 42705035
Alignment:
Q  380 tagagtatcacatcctattatgaacctccatgcgtccattcctga 424  Q
    ||||||||||||||||||| |||||| || |||| ||||||||||    
T  42705079 tagagtatcacatcctattgtgaacccccctgcggccattcctga 42705035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 8e-31; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 187 - 370
Target Start/End: Original strand, 26653528 - 26653712
Alignment:
Q  187 gatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacaga 286  Q
    |||||||||||||||||||  || ||||||| |||||||||||| |  ||||| |||||||||||| ||||||| ||||||||||||| ||| ||||| |    
T  26653528 gatggatcatggccggcaatgactagagggtctgtcacttgccagaacgggttcttaggcagtacgggtatgtccagactattcccagaccttctacata 26653627  T
Q  287 cattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ctctacatgccctcagccagcaggagaggggtgat 370  Q
    ||||||||||||| | | ||  ||||| || ||| ||||    |||||| ||||||||| ||||| |||||||||||||||||||    
T  26653628 cattgggcctcttgcagtagatgacgtggcaatgaccttgatggagtttgctctacatgtcctcaaccagcaggagaggggtgat 26653712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 187 - 370
Target Start/End: Original strand, 26925113 - 26925297
Alignment:
Q  187 gatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacaga 286  Q
    |||||||||||||||||||  || ||||||| |||||||||||| |  ||||| |||||||||||| ||||||| ||||||||||||| ||| ||||| |    
T  26925113 gatggatcatggccggcaatgactagagggtctgtcacttgccagaacgggttcttaggcagtacgggtatgtccagactattcccagaccttctacata 26925212  T
Q  287 cattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ctctacatgccctcagccagcaggagaggggtgat 370  Q
    ||||||||||||| | | ||  ||||| || ||| ||||    |||||| ||||||||| ||||| |||||||||||||||||||    
T  26925213 cattgggcctcttgcagtagatgacgtggcaatgaccttgatggagtttgctctacatgtcctcaaccagcaggagaggggtgat 26925297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 111 - 367
Target Start/End: Original strand, 13274043 - 13274300
Alignment:
Q  111 cattctcatgtcatctggaggtcggaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaataca 210  Q
    ||||| ||||||| ||||||| || || ||||||  | | |||| |||  |||| |||||||||||| |||||| |||||||||||||||||||   |||    
T  13274043 cattcacatgtcacctggaggccgtacgagagacggcgacacatcacgctcttttaggacatatgctggtactccagatggatcatggccggcagcgaca 13274142  T
Q  211 agagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcagggga 310  Q
     ||  ||  ||||||||||| || ||||| |||||||||||| ||||||| |||||||||||||| ||||||||| ||||| || | || |||  |  ||    
T  13274143 ggattgtccgtcacttgccagagcgggttcttaggcagtacgggtatgtccagactattcccagggctcctacagccattgagcttattgcggtggatga 13274242  T
Q  311 cgtagctatggccttcgcagag-tttctctacatgccctcagccagcaggagaggggt 367  Q
    ||| ||   ||||||| ||||| |||||||||||| ||||||||| ||||| ||||||    
T  13274243 cgtggcctaggccttcacagagttttctctacatgtcctcagccatcaggataggggt 13274300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 36 - 291
Target Start/End: Original strand, 2742882 - 2743137
Alignment:
Q  36 cttgtgagtcgatggaaacctcctaagggatttaatgatcctggacacaacatatatgacattgttttagtggaccattctcatgtcatctggaggtcgg 135  Q
    ||||||| || |||||||||||| | ||| |||  | ||||||||||| ||| || || ||| | ||   |||||||||| ||||||| ||||||| ||     
T  2742882 cttgtgattcaatggaaacctccaaggggcttttctaatcctggacactacagatctgccatcgattcgttggaccattcacatgtcacctggaggccgt 2742981  T
Q  136 accagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtg 235  Q
    || |||||| || | |||| ||| |||||||||||||||||| ||||||  ||||||||||| ||||||   ||| || |||   ||||||| || || |    
T  2742982 acgagagacgacgacacatcacgccctttcaggacatatgctggtactccggatggatcatgaccggcagcgacaggatggtccatcacttgtcagagcg 2743081  T
Q  236 ggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattg 291  Q
    |||| ||||| |||||| ||||||| | ||||||| |||| |||||||||||||||    
T  2743082 ggttcttaggaagtacgggtatgtccaaactattctcagggctcctacagacattg 2743137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 73 - 172
Target Start/End: Original strand, 26648609 - 26648708
Alignment:
Q  73 atcctggacacaacatatatgacattgttttagtggaccattctcatgtcatctggaggtcggaccagagacaacaagacattacgtcctttcaggacat 172  Q
    ||||||||||| ||| | ||| ||||| || | ||||||||||||||||||||||||||||| || |||||| || |||||||||| | |||||||||||    
T  26648609 atcctggacactacaaagatgccattgattcactggaccattctcatgtcatctggaggtcgtacgagagacgacgagacattacgccttttcaggacat 26648708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 73 - 172
Target Start/End: Original strand, 26920194 - 26920293
Alignment:
Q  73 atcctggacacaacatatatgacattgttttagtggaccattctcatgtcatctggaggtcggaccagagacaacaagacattacgtcctttcaggacat 172  Q
    ||||||||||| ||| | ||| ||||| || | ||||||||||||||||||||||||||||| || |||||| || |||||||||| | |||||||||||    
T  26920194 atcctggacactacaaagatgccattgattcactggaccattctcatgtcatctggaggtcgtacgagagacgacgagacattacgccttttcaggacat 26920293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 21101423 - 21101479
Alignment:
Q  235 gggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattg 291  Q
    ||||| |||||||||||| ||||||| |||||||||| ||| |||||||||||||||    
T  21101423 gggttcttaggcagtacgtgtatgtccagactattcctagggctcctacagacattg 21101479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 283
Target Start/End: Complemental strand, 24209332 - 24209211
Alignment:
Q  162 tttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtct 261  Q
    |||| ||||||||||| ||||||  ||||||||||| ||| |||| ||| || |    ||||||||||| || ||||| | ||||||||||| |||| ||    
T  24209332 tttcgggacatatgctggtactccggatggatcatgaccgacaaagacaggatgtgccgtcacttgccagagcgggttctgaggcagtacgactatgcct 24209233  T
Q  262 agactattcccaggcctcctac 283  Q
    |||| |||| ||| ||||||||    
T  24209232 agaccattcacagacctcctac 24209211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 380 - 436
Target Start/End: Original strand, 26653769 - 26653825
Alignment:
Q  380 tagagtatcacatcctattatgaacctccatgcgtccattcctgactacacagttga 436  Q
    ||||||||||||||||||| |||||| || ||   ||||||||||||||||||||||    
T  26653769 tagagtatcacatcctattgtgaacccccctgtagccattcctgactacacagttga 26653825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 380 - 436
Target Start/End: Original strand, 26925354 - 26925410
Alignment:
Q  380 tagagtatcacatcctattatgaacctccatgcgtccattcctgactacacagttga 436  Q
    ||||||||||||||||||| |||||| || ||   ||||||||||||||||||||||    
T  26925354 tagagtatcacatcctattgtgaacccccctgtagccattcctgactacacagttga 26925410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 435
Target Start/End: Original strand, 21101616 - 21101672
Alignment:
Q  380 tagagtatcacatcctattatgaacctccat-gcgtccattcctgactacacagttg 435  Q
    ||||||||| ||||||||| |||||| || | ||| |||||||||||||||||||||    
T  21101616 tagagtatcgcatcctattgtgaaccccccttgcggccattcctgactacacagttg 21101672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 118 - 376
Target Start/End: Complemental strand, 37227980 - 37227721
Alignment:
Q  118 atgtcatctggaggtcggaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggt 217  Q
    |||||| ||||||| || || |||||| || | |||| ||| ||||| |||||||||||||||||||  ||||||||||||||| ||   ||| || |||    
T  37227980 atgtcacctggaggccgtacgagagacgacgacacatcacgcccttttaggacatatgctagtactccggatggatcatggccgacatcgacaggatggt 37227881  T
Q  218 atgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagct 317  Q
       |||||||||| || ||||| |||||||||||| ||||||| |||||||||||||| ||||||||||||||| || | || |||| |  ||||| ||     
T  37227880 ccctcacttgccagagcgggttcttaggcagtacgggtatgtccagactattcccagggctcctacagacattgagcttattgcggcggatgacgtggcc 37227781  T
Q  318 atggccttcgcagagttt-ctctacatgccctcagccagcaggagaggggtgatctagtt 376  Q
      ||||||| | |||||| ||||||||| ||||||||| || || |||||| ||| ||||    
T  37227780 caggccttcacggagtttgctctacatgtcctcagccatcaagataggggtcatccagtt 37227721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 106 - 306
Target Start/End: Original strand, 14096646 - 14096846
Alignment:
Q  106 tggaccattctcatgtcatctggaggtcggaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaa 205  Q
    ||||||||||||||||||  |||||  || || |||||| || | |||| | | |||||||||||||| |||||||||| |||||||||||||||| ||     
T  14096646 tggaccattctcatgtcacttggagaccgtacgagagacgacgacacataatgccctttcaggacataagctagtactccagatggatcatggccgacag 14096745  T
Q  206 atacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggca 305  Q
      |||  | |||  ||||||||||| || || || |||||||||||  ||||||| |||||||||||  ||||||||||||||||| || |||| |||||    
T  14096746 cgacataatggtccgtcacttgccagagcggtttcttaggcagtacaggtatgtccagactattcccttgcctcctacagacattgagcttcttgcggca 14096845  T
Q  306 g 306  Q
    |    
T  14096846 g 14096846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 427
Target Start/End: Complemental strand, 37227670 - 37227623
Alignment:
Q  380 tagagtatcacatcctattatgaacctccatgcgtccattcctgacta 427  Q
    ||||||||||||||||||| |||||| || |||| |||||||||||||    
T  37227670 tagagtatcacatcctattgtgaacccccctgcggccattcctgacta 37227623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 106 - 306
Target Start/End: Original strand, 6988 - 7188
Alignment:
Q  106 tggaccattctcatgtcatctggaggtcggaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaa 205  Q
    ||||||||||||||||||  |||||  || || |||||| || | |||| | | |||||||||||||| |||||||||| |||||||||||||||| ||     
T  6988 tggaccattctcatgtcacttggagaccgtacgagagacgacgacacataatgccctttcaggacataagctagtactccagatggatcatggccgacag 7087  T
Q  206 atacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggca 305  Q
      |||  | |||  ||||||||||| || || || |||||||||||  ||||||| |||||||||||  ||||||||||||||||| || |||| |||||    
T  7088 cgacataatggtccgtcacttgccagagcggtttcttaggcagtacaggtatgtccagactattcccttgcctcctacagacattgagcttcttgcggca 7187  T
Q  306 g 306  Q
    |    
T  7188 g 7188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 106 - 291
Target Start/End: Complemental strand, 6285999 - 6285814
Alignment:
Q  106 tggaccattctcatgtcatctggaggtcggaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaa 205  Q
    |||||||||| |||||||  |||||| || || ||| || || | |||| ||| ||||| |||||||||||| |||||| ||||||||||||||  |||     
T  6285999 tggaccattcacatgtcacttggaggccgtacgagacacgacgacacatcacgccctttgaggacatatgctggtactccagatggatcatggctagcag 6285900  T
Q  206 atacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattg 291  Q
      | | || |||  |||||||| || || ||||| |||||||||||| ||||||| |||||||||||||| |||||| ||||||||    
T  6285899 cgataggatggtccgtcacttggcagagcgggttcttaggcagtacgggtatgtccagactattcccagggctcctatagacattg 6285814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 187 - 304
Target Start/End: Original strand, 35014337 - 35014454
Alignment:
Q  187 gatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacaga 286  Q
    |||||||||||| ||||||  ||| || |||  ||||||||||| || ||||| |||||||||||| ||||||| ||||||||| |||| ||| |||| |    
T  35014337 gatggatcatggtcggcaacgacaggatggtccgtcacttgccagagcgggttcttaggcagtacgggtatgtccagactattcacagggctcgtacata 35014436  T
Q  287 cattgggcctcttacggc 304  Q
    ||||| || | |||||||    
T  35014437 cattgagcttattacggc 35014454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 2029728 - 2029818
Alignment:
Q  162 tttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacg 252  Q
    ||||||||| | |||| ||| ||| |||||||||||||||||||| | |||| |||  ||||||||||| || ||||| | ||||||||||    
T  2029728 tttcaggacgtgtgctggtattctggatggatcatggccggcaaacagaagatggtgcgtcacttgccagagcgggttctgaggcagtacg 2029818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 291
Target Start/End: Complemental strand, 257416 - 257345
Alignment:
Q  220 gtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattg 291  Q
    ||||||||||| || ||||| ||||| |||||| ||||||| ||||||||| |||| |||| ||||||||||    
T  257416 gtcacttgccagagcgggttcttaggtagtacgggtatgtccagactattctcagggctcccacagacattg 257345  T

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Target: scaffold0007; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 180
Target Start/End: Complemental strand, 274173 - 274099
Alignment:
Q  106 tggaccattctcatgtcatctggaggtcggaccagagacaacaagacattacgtcctttcaggacatatgctagt 180  Q
    ||||||||||  |||||| ||||||| || || |||||| || | |||| ||| |||||||||||||||||||||    
T  274173 tggaccattcaaatgtcacctggaggccgtacgagagacgacgacacatgacgccctttcaggacatatgctagt 274099  T

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Target: scaffold0010 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 260
Target Start/End: Complemental strand, 32451 - 32353
Alignment:
Q  162 tttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtc 260  Q
    |||||||||||||||| |||||| |||||||||||||||  || | ||| || |||  ||||||||||| || ||||| ||||| |||||  |||||||    
T  32451 tttcaggacatatgctggtactccagatggatcatggccaacagagacatgatggtccgtcacttgccagagcgggttcttaggtagtacaggtatgtc 32353  T

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