View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8810A_low_202 (Length: 250)

Name: NF8810A_low_202
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8810A_low_202
NF8810A_low_202
[»] chr8 (1 HSPs)
chr8 (1-241)||(26992370-26992617)
[»] chr7 (1 HSPs)
chr7 (47-112)||(4832334-4832399)
[»] chr2 (3 HSPs)
chr2 (47-112)||(1751391-1751456)
chr2 (47-163)||(45000058-45000181)
chr2 (50-109)||(1755750-1755809)
[»] scaffold0078 (2 HSPs)
scaffold0078 (47-112)||(19286-19351)
scaffold0078 (24-65)||(19346-19387)
[»] chr5 (2 HSPs)
chr5 (47-112)||(37254006-37254071)
chr5 (24-65)||(37254066-37254107)


Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 26992617 - 26992370
Alignment:
Q  1 tattttattcatttgcaaatactagccgtacaaagaaagaaaataaactaagtcactccactaacacaaacgtggaatgtggagaaaactaaccaagtcc 100  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26992617 tattttattcagttgcaaatactagccttacaaagaaagaaaataaactaagtcactccactaacacaaacgtggaatgtggagaaaactaaccaagtcc 26992518  T
Q  101 cagtaataagtc-------gtagagactattgaccaaaagatagaaacaaatactaataaatatgacagccagcaaagcaacagtattgtcattnnnnnn 193  Q
    ||||||||||||       |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||          
T  26992517 cagtaataagtcttaagaagtagggactattgaccaaaagatagaaacaaatactaataaatatgagagccagcaaagcaacagtattgtcattaaaaaa 26992418  T
Q  194 nnnnnncatataagtttgaatttttctaattacaccccatatattctt 241  Q
          ||||||||||||||||||||||||||||||||||||||||||    
T  26992417 taaaaacatataagtttgaatttttctaattacaccccatatattctt 26992370  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 4832399 - 4832334
Alignment:
Q  47 actaagtcactccactaacacaaacgtggaatgtggagaaaactaaccaagtcccagtaataagtc 112  Q
    ||||| ||| |||||||||| |||||||||||||||||||||||||| |||||||| |||||||||    
T  4832399 actaactcagtccactaacaaaaacgtggaatgtggagaaaactaactaagtcccactaataagtc 4832334  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 1751391 - 1751456
Alignment:
Q  47 actaagtcactccactaacacaaacgtggaatgtggagaaaactaaccaagtcccagtaataagtc 112  Q
    ||||| ||| |||||||||| |||||||||||||||||||||||||| |||||||| |||||||||    
T  1751391 actaactcagtccactaacagaaacgtggaatgtggagaaaactaactaagtcccactaataagtc 1751456  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 163
Target Start/End: Original strand, 45000058 - 45000181
Alignment:
Q  47 actaagtcactccactaacacaaacgtggaatgtggagaaaactaaccaagtcccagtaataagtc-------gtagagactattgaccaaaagatagaa 139  Q
    ||||| ||| |||||||||| |||||||||||||||||||||||||| |||||||| |||||| ||       |||| || |||| ||  ||||||||||    
T  45000058 actaactcagtccactaacagaaacgtggaatgtggagaaaactaactaagtcccactaataaatcctaagaagtagggattattaacttaaagatagaa 45000157  T
Q  140 acaaatactaataaatatgacagc 163  Q
    ||| |||||||||| |||||||||    
T  45000158 acagatactaataactatgacagc 45000181  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 1755750 - 1755809
Alignment:
Q  50 aagtcactccactaacacaaacgtggaatgtggagaaaactaaccaagtcccagtaataa 109  Q
    |||| |||||||||||| |||||||||||||||||||||||||  |||||||| ||||||    
T  1755750 aagttactccactaacaaaaacgtggaatgtggagaaaactaattaagtcccactaataa 1755809  T

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Target: scaffold0078 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 19351 - 19286
Alignment:
Q  47 actaagtcactccactaacacaaacgtggaatgtggagaaaactaaccaagtcccagtaataagtc 112  Q
    ||||| ||| |||||||||| ||||||||||||||||||||||| || |||||||| |||||||||    
T  19351 actaactcagtccactaacagaaacgtggaatgtggagaaaactcactaagtcccactaataagtc 19286  T

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Target: scaffold0078; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 19387 - 19346
Alignment:
Q  24 agccgtacaaagaaagaaaataaactaagtcactccactaac 65  Q
    |||| ||||||||||||||||||| ||||| |||||||||||    
T  19387 agccttacaaagaaagaaaataaattaagttactccactaac 19346  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 37254071 - 37254006
Alignment:
Q  47 actaagtcactccactaacacaaacgtggaatgtggagaaaactaaccaagtcccagtaataagtc 112  Q
    ||||| ||| |||||||||| ||||||||||||||||||||||| || |||||||| |||||||||    
T  37254071 actaactcagtccactaacagaaacgtggaatgtggagaaaactcactaagtcccactaataagtc 37254006  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 37254107 - 37254066
Alignment:
Q  24 agccgtacaaagaaagaaaataaactaagtcactccactaac 65  Q
    |||| ||||||||||||||||||| ||||| |||||||||||    
T  37254107 agccttacaaagaaagaaaataaattaagttactccactaac 37254066  T

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